Input parameters:

  Query = ENSMUSP00000112447 (Len=612)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000112447, Len=612):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSFGIGKTKEVIFSMEEGSVKMFLRGRPVPMLIPDELAPTYSLDTRSELPSSRLKLDWVYGYRGRDCRANLYLLPTGEV 80  
WD40-rpts         (_________________WD 1_________________)                                     

Query       81 VYFVASVAVLYSVEEQRQRHYLGHNDDIKCLAVHPDMVTIATGQVAGTTKEGKNGGNLLCAVDESNDHVLSVWDWAKESK 160 
WD40-rpts                  (__________________WD 2_________________)                        (__

Query      161 VVDSKCSNEAVLVATFHPTDPSLLITCGKSHIYFWSLEGGSLSKRQGLFEKHEKPKYVLCVTFLEGGDVVTGDSGGNLYV 240 
WD40-rpts      _______________WD 3________________)        (________________WD 4_______________

Query      241 WGKGGNRITQEVQGAHDGGVFALCALRDGTLVSGGGRDRRVVLWGSDYSKVQEVEVPEDFGPVRTVAEGRGDTLYVGTTR 320 
WD40-rpts      _)(___________________WD 5__________________)   (_________________WD 6__________

Query      321 NSILLGSVHTGFSLLVQGHVEELWGLATHPSRAQFVTCGQDKLVHLWSSETHQPVWSRSIEDPARSAGFHPSGSVLAVGT 400 
WD40-rpts      ______)  (_________________WD 7________________)  (_________________WD 8________

Query      401 VTGRWLLLDTETHDLVAIHTDGNEQISVVSFSPDGAYLAVGSHDNLVYVYTVDQGGRKVSRLGKCSGHSSFITHLDWAQD 480 
WD40-rpts      ________)   (_________________WD 9________________)       (_________________WD10

Query      481 STCFVTNSGDYEILYWDPVTCKQITSADTVRNVEWATATCVLGFGVFGIWPEGADGTDINAVARSHDGKLLVSADDFGKV 560 
WD40-rpts      ________________)                  (______________________WD11__________________

Query      561 HLFSYPCCQPRALSHKYGGHSSHVTNVAFLWDDSMALTTGGKDTSVLQWRVA 612 
WD40-rpts      ___)      (_________________WD12_________________)  

12 WD40-repeats found in QUERY=ENSMUSP00000112447 (Len=612):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43       3.86  274.15  0.01251       12.5%     15.75
  WD 2:  Seg  8    93-133      7.96  443.47  6.6e-05       25.0%     49.25
  WD 3:  Seg 14   158-196      7.35  418.48  0.00014       15.0%     58.34
  WD 4:  Seg 18   205-242      4.80  312.90  0.00377       25.0%     46.96
  WD 5:  Seg 22   243-285      7.37  419.11  0.00014       22.5%     53.20
  WD 6:  Seg 26   289-327      6.86  398.01  0.00027       12.5%     56.35
  WD 7:  Seg 30   330-368      7.65  430.78  9.7e-05       15.0%     54.44
  WD 8:  Seg 34   371-409      6.69  390.97  0.00033       20.0%     55.98
  WD 9:  Seg 38   413-451      8.87  480.96  2.0e-05       30.0%     58.42
  WD10:  Seg 42   459-497      8.27  456.23  4.4e-05       32.5%     54.58
  WD11:  Seg 48   516-564      6.67  390.14  0.00034       22.5%     44.73
  WD12:  Seg 52   571-610      7.10  407.98  0.00020       30.0%     53.68

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     FGI---G---------KTKEVIFSMEEGSVKMF-LRGRPVPMLIPDELAPTYS
   WD 2   93-133    VEE--QR---------QRHYLGHNDDIKCLAVH-PDMVTIATGQVAGTTKEGK
   WD 3  158-196    -ES---K---------VVDSKCSNEAVLVATFH-PTDPSLLITCGKSHIYFWS
   WD 4  205-242    -RQ---G---------LFEKHEKPKYVLCVTFL-EGGD-VVTGDSGGNLYVWG
   WD 5  243-285    KGGNRIT---------QEVQGAHDGGVFALCAL-RDGTLVSGGGRDRRVVLWG
   WD 6  289-327    -SK---V---------QEVEVPEDFGPVRTVAE-GRGDTLYVGTTRNSILLGS
   WD 7  330-368    -TG---F---------SLLVQGHVEELWGLATH-PSRAQFVTCGQDKLVHLWS
   WD 8  371-409    -TH---Q---------PVWSRSIEDPARSAGFH-PSGSVLAVGTVTGRWLLLD
   WD 9  413-451    -HD---L---------VAIHTDGNEQISVVSFS-PDGAYLAVGSHDNLVYVYT
   WD10  459-497    -VS---R---------LGKCSGHSSFITHLDWA-QDSTCFVTNSGDYEILYWD
   WD11  516-564    ATA---TCVLGFGVFGIWPEGADGTDINAVARS-HDGKLLVSADDFGKVHLFS
   WD12  571-610    -RA---L---------SHKYGGHSSHVTNVAFLWDDSMALTTGGKDTSVLQWR

   WD40 Template    TGE---C---------LRTLSGHTSGVTSVSFS-PDGKRLVSGSEDGTIKVWD