Input parameters:

  Query = ENSMUSP00000112622 (Len=522)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000112622, Len=522):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METEPDQEHLDQNPCARTVEEELSKSFNLEASLSKFSCLDLDKELEFRSDLIDDKEFDIPQVDTPPTLESILNETDDEDE 80  
WD40-rpts                                                                                      

Query       81 SFVLEDPTLLNVDTIDSHSYDTSSVASSDSGDRANLKRKKKLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAI 160 
WD40-rpts              (_________________WD 1________________)        (___________________WD 2_

Query      161 AVSSLIAVGTSHGLALIFDQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP 240 
WD40-rpts      __________________)(____________________WD 3____________________)          (____

Query      241 PGTAILHIKFTDDPTLAICNDSGGIVQFEESRLIRMAEKAEFYQICEFMYEREHQYDKIIDCYLHDPLREEEVFNYIHNI 320 
WD40-rpts      _____________________________WD 4________________________________)              

Query      321 LSIPGHSAEEKQSVWQKAMNHMEELVSLKPCKAAELVATHFSEQIEVVIGQLQNQLLLFKFLRSLLDPRYWAIHPLEHGQ 400 
WD40-rpts                                                                                      

Query      401 CAGPTPLERTDSSSTIRCQPLATAVRASVFPRAAVLSHPEDTAVQQVALTAGFALFLQLFCRFPSAIGCGSDVLVTVCPL 480 
WD40-rpts                                                                                      

Query      481 FSFFLSSVGSLCINHRPKNKTKPTTFQLRDKSCTNLGMSVSI 522 
WD40-rpts                                                

4 WD40-repeats found in QUERY=ENSMUSP00000112622 (Len=522):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    89-127      5.16  327.80  0.00238       17.5%     -3.55
  WD 2:  Seg  2   136-179      4.57  303.31  0.00508       17.5%     31.94
  WD 3:  Seg  6   180-225      8.17  452.09  5.0e-05       30.0%     50.35
  WD 4:  Seg 11   236-306      4.07  282.92  0.00954       12.5%     36.83

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   89-127    -LLNVD------TIDSHSYDTSSVASSDSG---------DRANLKRKKKLPDSF------------------------------------S
   WD 2  136-179    S-----------LLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIF------------------------------------D
   WD 3  180-225    QNQALRLCLGSTSVGGQYGAISALSINNDC---------SRLLCGFAKGQITMW------------------------------------D
   WD 4  236-306    TD-----------AHPPGTAILHIKFTDDP---------TLAICNDSGGIVQFEESRLIRMAEKAEFYQICEFMYEREHQYDKIIDCYLHD

   WD40 Template    TGECLR------TLSGHTSGVTSVSFSPDG---------KRLVSGSEDGTIKVW------------------------------------D