Input parameters:

  Query = ENSMUSP00000113202 (Len=549)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000113202, Len=549):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGSRNSSSAGSGSLEPSEGLSRRGTGLRRSEEEEEEDEDVDLAQVLAYLLRRGQVRLVQGRGAANLQLIQALSDSEEEHD 80  
WD40-rpts      (__________WD 1__________)   (__________________WD 2_________________)        (_

Query       81 SAWDGRLGDRYNPPVDATPDTRELEYNEIKTQVGLATGRLGLRRTALQQSFPQMLHQRERGLCHRGSFSLGEQSRVMSHF 160 
WD40-rpts      ________________WD 3________________)   (________________WD 4________________)  

Query      161 LPNDLSFTDTYSQKAFCGIYSKDGQIFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSD 240 
WD40-rpts       (_________________WD 5________________)     (__________________WD 6____________

Query      241 YIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADISS 320 
WD40-rpts      _____)          (________________WD 7_______________)   (_________________WD 8__

Query      321 QILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAA 400 
WD40-rpts      _______________)        (_________________WD 9________________)   (_____________

Query      401 TQQNWDYRWQQVPKIAWKKLKLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLT 480 
WD40-rpts      ____WD10________________)____________________WD11___________________)   (_______

Query      481 NHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQDDMPESDMNRVCSSGPTPVPCPSVAFSSPQ 549 
WD40-rpts      __________WD12________________)                                      

12 WD40-repeats found in QUERY=ENSMUSP00000113202 (Len=549):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-26       3.97  278.45  0.01096       12.5%     28.04
  WD 2:  Seg  4    30-70       6.18  370.10  0.00064       15.0%     52.85
  WD 3:  Seg  8    79-117      5.65  348.22  0.00126       10.0%     32.57
  WD 4:  Seg 11   121-158      4.60  304.67  0.00487       15.0%     31.86
  WD 5:  Seg 15   162-200      8.51  466.30  3.2e-05       22.5%     52.40
  WD 6:  Seg 19   206-246      6.72  392.32  0.00032       22.5%     53.68
  WD 7:  Seg 24   257-293      8.09  448.83  5.6e-05       25.0%     41.44
  WD 8:  Seg 27   297-336      8.16  451.59  5.1e-05       30.0%     57.46
  WD 9:  Seg 31   345-383      9.47  505.93  9.4e-06       37.5%     51.14
  WD10:  Seg 35   387-425      4.31  292.49  0.00710        5.0%     10.93
  WD11:  Seg 36   425-469      6.80  395.50  0.00029       27.5%     49.48
  WD12:  Seg 40   473-511      9.75  517.59  6.6e-06       32.5%     56.24

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-26     -----------------------MGSRNSSS-AGSGSLEPSEGLSRRGTG
   WD 2   30-70     SEEEEEEDED------VDLAQ--VLAYLLRR-GQVRLVQGRGAANLQLIQ
   WD 3   79-117    HDSAWDGRLG------D--RY--NPPVDATP-DTRELEYNEIKTQVGLAT
   WD 4  121-158    GLRRTALQQS------F--PQ--MLHQRERG-LCHR-GSFSLGEQSRVMS
   WD 5  162-200    PNDLSFTDTY------S--QK--AFCGIYSK-DGQIFMSACQDQTIRLYD
   WD 6  206-246    FHKFKSIKAR------D--VGWSVLDVAFTP-DGNHFLYSSWSDYIHICN
   WD 7  257-293    --LDLRPDER------R--FA--VFSIAVSS-DGREVLGGANDGCLYVFD
   WD 8  297-336    NRRTLQIESH------E--DD--VNAVAFADISSQILFSGGDDAICKVWD
   WD 9  345-383    PKPVGALAGH------Q--DG--ITFIDSKG-DARYLISNSKDQTIKLWD
   WD10  387-425    FSSREGMEAS------R--LA--ATQQNWDY-RWQQVPKIAWKKLKLPGD
   WD11  425-469    DSSLMTYRGHGVLHTLI--RC--RFSPAHST-GQQFIYSGCSTGKVVVYD
   WD12  473-511    GHIVKKLTNH------K--AC--VRDVSWHP-FEEKIVSSSWDGNLRLWQ

   WD40 Template    GECLRTLSGH------T--SG--VTSVSFSP-DGKRLVSGSEDGTIKVWD