Input parameters:

  Query = ENSMUSP00000113854 (Len=1390)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000113854, Len=1390):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASCASIDIEDATQHLRDILKLDRPAGGSNAESQRPSSAYNGDLNGLLVPDPLSSGDGNSTNKPGIRTMPPINLQEKQVI 80  
WD40-rpts                                                                                      

Query       81 CLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKIQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVR 160 
WD40-rpts                                                                                      

Query      161 VISVSTSERTLLKGFTGSVADLAFAHLNSPQLACLDEAGNLFVWRLALVKGKIQEEILVHIRQPEGTALNHFRRIIWCPF 240 
WD40-rpts         (__________________WD 1__________________)                                   

Query      241 IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHNTWPVDVSQIKQGFIVVKGHSTCLSEGALSPDGTVLATASHDGF 320 
WD40-rpts                                                    (_________________WD 2____________

Query      321 VKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDI 400 
WD40-rpts      ____)   (_________________________WD 3_________________________)   (____________

Query      401 FSSVSVPPSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQDEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA 480 
WD40-rpts      ____WD 4________________)                                                       

Query      481 EEENDSLGTESSHGAGALESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLSTHTAHEDFTFGESRPELGSEGLAS 560 
WD40-rpts                                                                                      

Query      561 AAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFMTPTASLQQISASPSSSSSSSSSSSSSSSSSSSSLTAVSAVS 640 
WD40-rpts                                                                                      

Query      641 SSSAMDPSLPRPPEELTLSPKLQLDGSLTLNSSSSSLQASPRSLLPGLLPGPADKLISKGPGQVSTAASALSLDLQEVEP 720 
WD40-rpts                                                                                      

Query      721 LGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSVPEGLIEPDSMASAASALHLLSPRPRQGPELGSQLGL 800 
WD40-rpts                                                                                      

Query      801 DGGPGDGDRHSTPSLLEAALTQEVATPDSQVWPTAPDITRETCSTLTERPPYHLLQQRDSQDTSAEQSDHDDEVASLASA 880 
WD40-rpts                                                                                      

Query      881 SGGFGSKIPTPRLPSKDWKTKGSPRTSPKLKRKSKKDDGDSAVGSRLTEHQVAEPPEDWPALIWQQQRELAELWHNQEEL 960 
WD40-rpts                                                                                      

Query      961 LQRLCAQLEGLQSTVTDHVERALETRHEQEQRRLERALAEGQQRGGQLQEQLTQQLSQALSSAVAGRLERSVRDEIKKTV 1040
WD40-rpts                                                                                      

Query     1041 PPCVSRSLEPVAGQLSNSVATKLTAVEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQ 1120
WD40-rpts                                                                                      

Query     1121 AMFQQINDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMAATVSSSVRAEVQHQLHVAVGSL 1200
WD40-rpts                                                                                      

Query     1201 QESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPVPSAHLDCQAQQAHILQLLQQGHLNQAFQQALTAADLN 1280
WD40-rpts                                                                                      

Query     1281 LVLYVCETVDPAQVFGQPPCPLSQPVLLSLIQQLASDLGTRSDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQ 1360
WD40-rpts                                                                                      

Query     1361 FLQADPHNSLSKAARRLSLMLHGLVTPSLP 1390
WD40-rpts                                    

4 WD40-repeats found in QUERY=ENSMUSP00000113854 (Len=1390):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   164-205      5.67  348.82  0.00124       30.0%     42.59
  WD 2:  Seg 16   287-325      7.22  412.80  0.00017       30.0%     52.22
  WD 3:  Seg 20   329-384      2.92  235.23  0.04128       20.0%     34.02
  WD 4:  Seg 23   388-425      3.41  255.72  0.02207       25.0%     23.71

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  164-205    VST----SERTLLKGFTG-SVADLAFAHLNSPQ-----------LACLDEAGNLFVWR
   WD 2  287-325    -KQ----GFIV-VKGHST-CLSEGALS-PDGTV-----------LATASHDGFVKFWQ
   WD 3  329-384    EGQDEPRCLHE-WKPHDGRPLSCLLFC-DNHKKQDPEVPFWRFLITGADQNRELKMWC
   WD 4  388-425    -WT----CLQT-IRFSPD-IFSSVSVP-PSLKV-----------CLDLS-AEYLILSD

   WD40 Template    TGE----CLRT-LSGHTS-GVTSVSFS-PDGKR-----------LVSGSEDGTIKVWD