Input parameters:

  Query = ENSMUSP00000114700 (Len=562)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000114700, Len=562):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIVYVYLKKRSEFGKQCNFSDRQAELNIDILPNPELAALYVERNPVDTGIQCSASMSEHEANTERFEMESCGVNHVEGG 80  
WD40-rpts                                                                                      

Query       81 WPKDVNPQELEQTIRFRKKVEKDENYINAVMQLGSIMEHCIKQNNAIDIYEEYFDDEEAVEVTEEAPSAKTINVFRDPQE 160 
WD40-rpts                                                                                      

Query      161 IKRTATHLSWHPDGNRKLAVAYSCLKFQRAPMSMNYDSYIWDLENPNRPEIALKPLSPLVTLEYNPKDSHVLLGGCYNGQ 240 
WD40-rpts                                                (___________________WD 1______________

Query      241 IACWDTRKGSLVAELSTIEFSHRDPVYGTIWLQSKTGTECFSASTDGQVMWWDIRKISEPIEVVIMDISRKEQLENALGA 320 
WD40-rpts      ____)       (__________________WD 2_________________)                           

Query      321 ISLEFESTLPTKFMVGTEQGIVISCNRKAKTQAEKIVCTFYGHHGPIYALQRNPFYPKNFLTVGDWTARIWSEDSRESSI 400 
WD40-rpts                      (_________________________WD 3_________________________)(_______

Query      401 MWTKYHMAYLSDGAWSPVRPAVFFTTKMDGTLDIWDLVFKQCDPALSLKDNGCLIACGSELGTTTLLEVSSSLSTLQRNE 480 
WD40-rpts      ____________WD 4___________________)                                            

Query      481 KNIASSIFERETRREKILEARHREMRLKEKGKVEGKEDDQKEEEAALDLDELVGKAEEEFFEVIFSELKRKEAEALKKKP 560 
WD40-rpts                                                                                      

Query      561 KP 562 
WD40-rpts        

4 WD40-repeats found in QUERY=ENSMUSP00000114700 (Len=562):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   203-245      4.08  283.35  0.00942       25.0%     45.84
  WD 2:  Seg 15   253-293      4.55  302.70  0.00518       27.5%     48.55
  WD 3:  Seg 22   337-392      4.90  316.96  0.00333       20.0%     38.94
  WD 4:  Seg 26   393-436      3.97  278.45  0.01096       20.0%     52.83

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  203-245    LE---NPN--------RPEIA--------LKPLSPLVTLEY--NPKDSHVL-LGGCYNGQIACWD
   WD 2  253-293    -A---ELS--------T--IE--------FSHRDPVYGTIWLQSK-TGTEC-FSASTDGQVMWWD
   WD 3  337-392    TE---QGIVISCNRKAK--TQAEKIVCTFYGHHGPIYALQR--NP-FYPKN-FLTVGDWTARIWS
   WD 4  393-436    EDSRESSI--------M--WT--------KYHMAYLSDGAW--SP-VRPAVFFTTKMDGTLDIWD

   WD40 Template    TG---ECL--------R--TL--------SGHTSGVTSVSF--SP-DGKRL-VSGSEDGTIKVWD