Input parameters:

  Query = ENSMUSP00000115550 (Len=325)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000115550, Len=325):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAWMTYVSHWFEQDDWYEGLQRATMSQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMS 80  
WD40-rpts                                                                              (_______

Query       81 EHKKTITAISWCPHNPDLFASSSTDNLVIIWNVAEQKVIAKLDNIKETPACLGWCWNTHDAVAFVSQKGPLLIWTISGPD 160 
WD40-rpts      __________WD 1_________________)   (_________________WD 2_________________)(____

Query      161 SGVSVHKEAHSFASDICIFRWHTQKKGKVAFGHIDGSISIFQPGSKNQKHVLRPDSLEGTDEEDPVTALEWDPLSTDYLL 240 
WD40-rpts      _________________WD 3____________________)          (_________________WD 4______

Query      241 VANLHFGIRLLDSESLYCITTFNLPSAAVSVQCLAWVPSAPGMFITGDSQVGVLRIWNVSRTTPIDNFKLKKTGFHCFHV 320 
WD40-rpts      ___________)   (___________________WD 5__________________)                      

Query      321 VNSPP 325 
WD40-rpts           

5 WD40-repeats found in QUERY=ENSMUSP00000115550 (Len=325):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    73-112      7.64  430.31  9.9e-05       22.5%     55.44
  WD 2:  Seg  9   116-155      6.95  401.83  0.00024       10.0%     57.01
  WD 3:  Seg 13   156-202      5.68  349.49  0.00121       12.5%     55.87
  WD 4:  Seg 17   213-252      6.21  371.01  0.00062       15.0%     43.88
  WD 5:  Seg 20   256-298      6.61  387.84  0.00037       20.0%     55.69

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   73-112    -F------KLHAIMSEHKKT--ITAISWCP-H--NPDLFASSSTDNLVIIWN
   WD 2  116-155    -Q------KVIAKLDNIKET--PACLGWCWNT--H-DAVAFVSQKGPLLIWT
   WD 3  156-202    ISGPDSGVSVHKEAHSFASD--ICIFRWHTQK--K-GKVAFGHIDGSISIFQ
   WD 4  213-252    -R------PDSLEGTDEEDP--VTALEWDPLS--T-DYLLVANLHFGIRLLD
   WD 5  256-298    -L------YCITTFNLPSAAVSVQCLAWVP-SAPG-MFITGDSQVGVLRIWN

   WD40 Template    TG------ECLRTLSGHTSG--VTSVSFSP-D--G-KRLVSGSEDGTIKVWD