Input parameters:

  Query = ENSMUSP00000116600 (Len=177)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000116600, Len=177):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XLWLTLHWPKNQPTQLVSSCFGGELLLWDLTQSWRRKYTLFSTSAEGHNHSRIVFNLCSLKTEDGKQLLLSTSMDRDVKC 80  
WD40-rpts      (____________WD 1___________)            (__________________WD 2________________

Query       81 WDMATLECCWTLPSLGGFAYSLAFSPVDVGSLAIGVGDGMIRVWNTLSIKNNYDVKNFWQGVKSKVTALCWHPNKEGCLA 160 
WD40-rpts      _)   (_________________WD 3_________________)       (_________________WD 4______

Query      161 FGTDDGKVGLYDTCSNK 177 
WD40-rpts      ___________)     

4 WD40-repeats found in QUERY=ENSMUSP00000116600 (Len=177):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-29       3.45  257.06  0.02118       17.5%     41.11
  WD 2:  Seg  5    42-82       6.98  402.97  0.00023       22.5%     45.15
  WD 3:  Seg  8    86-125      8.73  475.30  2.4e-05       40.0%     57.11
  WD 4:  Seg 11   133-172      7.24  413.79  0.00016       25.0%     43.53

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-29     ----------XLWLTLHWP---KN-QPTQ-LVSSCFGGELLLWD
   WD 2   42-82     -STSAEGHNHSRIVFNLCSLKTED-GKQL-LLSTSMDRDVKCWD
   WD 3   86-125    LECCWTLPSLGGFAYSLAF---SPVDVGS-LAIGVGDGMIRVWN
   WD 4  133-172    YDVKNFWQGVKSKVTALCW---HP-NKEGCLAFGTDDGKVGLYD

   WD40 Template    GECLRTLSGHTSGVTSVSF---SP-DGKR-LVSGSEDGTIKVWD