Input parameters:

  Query = ENSMUSP00000116689 (Len=224)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000116689, Len=224):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVKLSGKTGCRADITLIEGSLLVTAIGEPVLRFWDLERGENYILSLQEKFGFEKGESINCVCFCKAKGLLAAGTNKGRVA 80  
WD40-rpts      (_______________WD 1______________)              (______________WD 2____________

Query       81 MWKKVPSFPNGRGAEGKDMWALQTPTELEGNITQIKWGSRKNLLAVSSTESVSILSEQAMSSHFHQQVAAVQISPSLVNV 160 
WD40-rpts      __) (________________________WD 3_______________________)   (______________WD 4_

Query      161 SFLSTGGTHSLHTDMHISGVFATKDAVAVWNGKQVAIFEPSGSTLRNAGTFLCETSVLAMHEES 224 
WD40-rpts      ____________)                                                   

4 WD40-repeats found in QUERY=ENSMUSP00000116689 (Len=224):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-35       6.08  365.69  0.00073       22.5%     45.85
  WD 2:  Seg  6    50-83       6.33  376.27  0.00053       17.5%     42.75
  WD 3:  Seg  9    85-137      5.56  344.53  0.00141       12.5%     48.61
  WD 4:  Seg 13   141-173      3.38  254.31  0.02304       20.0%     32.53

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-35     -----------------MVKLSGKTGCRADITLI-EGSLLVTAIGEPVLRFWD
   WD 2   50-83     FG-------------------FEKGESINCVCFCKAKGLLAAGTNKGRVAMWK
   WD 3   85-137    VPSFPNGRGAEGKDMWALQTPTELEGNITQIKWGSRKNLLAVSSTESVSILSE
   WD 4  141-173    --------------------SSHFHQQVAAVQISPSLVNVSFLSTGGTHSLHT

   WD40 Template    TGE-------------CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD