Input parameters:

  Query = ENSMUSP00000120911 (Len=801)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000120911, Len=801):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAETAAGLCRFKANYAVERKIEPFYKGGKAQLDQTGHYLFCVCGTKVNILDVASGALLRSLEQEDQEDITSFDLSPDDEV 80  
WD40-rpts                                                            (_________________WD 1____

Query       81 LVTASRALLLAQWAWREGTVTRLWKAIHTAPVASMAFDATSTLLATGGCDGAVRVWDIVQHYGTHHFRGSPGVVHLVAFH 160 
WD40-rpts      _____________)   (_________________WD 2_________________)   (__________________W

Query      161 PDPTRLLLFSSAVDTSIRVWSLQDRSCLAVLTAHYSAVTSLSFSEGGHTMLSSGRDKICIVWDLQSYQTTRTVPVFESVE 240 
WD40-rpts      D 3_________________)   (_________________WD 4________________)           (_____

Query      241 ASVLLPEQPAPALGVKSSGLHFLTAGDQGILRVWEAASGQCVYTQPQMPGLRQELTHCTLARAADLLLTVTADHNLLLYE 320 
WD40-rpts      _____________WD 5_________________)   (__________________WD 6__________________)

Query      321 AHSLQLQKQFAGYSEEVLDVRFLGPSDSHIVVASNSPCLKVFELQTLACQILHGHTDIVLALDVFRKGWLFASCAKDQSI 400 
WD40-rpts         (_________________WD 7_________________)  (_________________WD 8_____________

Query      401 RIWKMNKAGQVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALLAKSTAADSGPVLLQAQTTRRCHDK 480 
WD40-rpts      ___)(____________________WD 9____________________)                       (______

Query      481 DINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFTGHRRGLWNVQFSPTDQVLATASADGTIKLWALQDFSCLKTFE 560 
WD40-rpts      ________WD10______________)   (_________________WD11________________)   (_______

Query      561 GHDASVLKVAFVSRGSQLLSSGSDGLLKLWTIKSNECVRTLDAHEDKVWGLHCSQLDDHAITGGSDSRIILWKDVTEAEQ 640 
WD40-rpts      __________WD12________________)   (_________________WD13________________)       

Query      641 AEEQAKREEQVIKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATVLRLRRDQKEALLRFCVT 720 
WD40-rpts                                                                                      

Query      721 WNTNSRHCHEAQAVLGVLLRHEAPEELLAYDGVRGSLEALLPYTERHFQRLSRTLQAATFLDFLWHNMKLSPCPAAAPPA 800 
WD40-rpts                                                                                      

Query      801 L 801 
WD40-rpts       

13 WD40-repeats found in QUERY=ENSMUSP00000120911 (Len=801):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    55-94       6.66  389.58  0.00035       32.5%     59.15
  WD 2:  Seg  9    98-137      8.01  445.51  6.2e-05       35.0%     58.28
  WD 3:  Seg 13   141-181      7.27  414.96  0.00016       32.5%     56.10
  WD 4:  Seg 17   185-223      9.62  511.86  7.8e-06       42.5%     58.33
  WD 5:  Seg 22   235-275      6.10  366.65  0.00071       12.5%     47.57
  WD 6:  Seg 26   279-320      6.33  376.05  0.00053       17.5%     53.75
  WD 7:  Seg 30   324-363      6.72  392.11  0.00032       22.5%     57.34
  WD 8:  Seg 34   366-404      8.19  452.90  4.9e-05       25.0%     55.16
  WD 9:  Seg 38   405-450      7.63  429.77  0.00010       37.5%     54.77
  WD10:  Seg 42   474-507      8.23  454.64  4.6e-05       32.5%     48.87
  WD11:  Seg 45   511-549      9.78  518.53  6.4e-06       40.0%     55.39
  WD12:  Seg 49   553-591      9.65  513.44  7.5e-06       37.5%     56.26
  WD13:  Seg 53   595-633      8.86  480.81  2.1e-05       30.0%     59.46

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-94     -GA-----LLR-S---LEQ-EDQEDITSFDL-SP-DDEV--LVTASRALLLAQWA
   WD 2   98-137    -GT-----VTR-L---WKAIHTA-PVASMAF-DA-TSTL--LATGGCDGAVRVWD
   WD 3  141-181    -HY-----GTH-H---FRG-SPG-VVHLVAF-HP-DPTRLLLFSSAVDTSIRVWS
   WD 4  185-223    -RS-----CLA-V---LTA-HYS-AVTSLSF-SE-GGHT--MLSSGRDKICIVWD
   WD 5  235-275    VFE-----SVEAS---VLL-PEQ-PAPALGV-KS-SGLH--FLTAGDQGILRVWE
   WD 6  279-320    -GQ-----CVY-TQPQMPG-LRQ-ELTHCTL-AR-AADL--LLTVTADHNLLLYE
   WD 7  324-363    -LQ-----LQK-Q---FAG-YSE-EVLDVRFLGP-SDSH--IVVASNSPCLKVFE
   WD 8  366-404    -TL-----ACQ-I---LHG-HTD-IVLALDV-FR-KGWL--FASCAKDQSIRIWK
   WD 9  405-450    MNKAGQVACVA-Q---GSG-HTH-SVGTICC-SRLKESF--LVTGSQDCTVKLWP
   WD10  474-507    ------------T---RRC-HDK-DINSLAV-SP-NDKL--LATGSQDRTAKLWA
   WD11  511-549    -CQ-----LLG-V---FTG-HRR-GLWNVQF-SP-TDQV--LATASADGTIKLWA
   WD12  553-591    -FS-----CLK-T---FEG-HDA-SVLKVAF-VS-RGSQ--LLSSGSDGLLKLWT
   WD13  595-633    -NE-----CVR-T---LDA-HED-KVWGLHC-SQ-LDDH--AITGGSDSRIILWK

   WD40 Template    TGE-----CLR-T---LSG-HTS-GVTSVSF-SP-DGKR--LVSGSEDGTIKVWD