Input parameters:

  Query = ENSMUSP00000124475 (Len=923)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000124475, Len=923):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPKPPKSPKGQKKGKKNMKQQLLVPEEEEPMNMESMGHPEIYPLVLTTKTQEIFNCRVDEDMTDEQTYKLIKKEDILAD 80  
WD40-rpts                                                                                      

Query       81 LQNRAAVSDFHPVKKIVREYPGEELLLVYDKDFKYGLNFYLIGTEDGKENFLKPPEVPEEQEEPKEHVQEDVYVYNPPVS 160 
WD40-rpts                                                                                      

Query      161 KPWVSLGSEKEIEEESVQESGKRVTYMISRKRSEFGAPVTFSDQNASSVKDAYIECTSYPEKNYTLSQVEKDVGLQVIAE 240 
WD40-rpts                                                                                      

Query      241 VKDTSTQTKWAFPKNATTQYYPREFSEEEKSLIGKSKSLVDFFNNVSTSVEVALQQNEIMNTFIDDWKNLAEEESTFGDK 320 
WD40-rpts                                                                                      

Query      321 TDTHLKEYQSFTDLHNTMEKMITCVSWHPTIFGLIVVSVAVRLSYEERVQNSGRLLLQPSLLLFWSFSDPIHPQLMLESP 400 
WD40-rpts                                                                        (_____________

Query      401 DDIFCFEFCPSDPNIIAGGCINGQIVLWDITAHADRIENIKTGGHRSKKTSLKPMFLLEPDSNKESMYIRHCAVSSIENG 480 
WD40-rpts      ______WD 1__________________)                                              (____

Query      481 HRKVITDIHWLPDSFEINRMGSVFENRSGINCQLVTCSADCTICFWDIRPQKPAVTAAAAASAATTATNNANSQQSPVEK 560 
WD40-rpts      ___________________WD 2_______________________)                                 

Query      561 KKEENIDIPFDVPSTFLHLDLSWKPLSRLKLSKGDTSLDHCPTKLSLGEDPFLCKIQGTSSIHIILRDKMLSQIKMVKTS 640 
WD40-rpts                                                                                      

Query      641 EINPYQNLEAGIANILKPIEDFCTKFFVGTEEGEVIYTDWKMERDSDTGRLMAKKPVSLYTVHDGAVHTIQRSPFFNDIV 720 
WD40-rpts                                                           (_________________WD 3_____

Query      721 LTVGGWNVAIWKEEVMTGPLLQTCCGPKRYTAGHWSLTRPGVFYIGREDGNVDIWDLLEKTHEPAQSQNICITMITYIKP 800 
WD40-rpts      ___________)    (_________________WD 4_________________)(_____________________WD

Query      801 WTFSSKQQFIAVADYYGTLHILEIPWTLSHPSLNEVSSVNYYFEREVRHLEYVQQRKEIREQEKIDMALELVKKKAKIYQ 880 
WD40-rpts       5____________________)                                                         

Query      881 KTKEQMEAELKLEYESYLDLEKSVLFALGLSKVSEKKSYLDSH 923 
WD40-rpts                                                 

5 WD40-repeats found in QUERY=ENSMUSP00000124475 (Len=923):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   387-429      4.33  293.51  0.00688       20.0%     44.90
  WD 2:  Seg 17   476-527      2.95  236.39  0.03985       32.5%     33.14
  WD 3:  Seg 28   694-732      4.15  286.15  0.00864       15.0%     43.78
  WD 4:  Seg 32   737-776      3.98  278.98  0.01078       22.5%     53.17
  WD 5:  Seg 36   777-823      3.63  264.81  0.01669       12.5%     50.74

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  387-429    FSD-------PIHPQLMLESPDDIFCFEFCPSDP-NII-----------------AGGCINGQIVLWD
   WD 2  476-527    SIE--------------NGHRKVITDIHWLP-DS-FEINRMGSVFENRSGINCQLVTCSADCTICFWD
   WD 3  694-732    -KK-------PV--SLYTVHDGAVHTIQRSP-FF-NDI-----------------VLTVGGWNVAIWK
   WD 4  737-776    -TG-------PL--LQTCCGPKRYTAGHWSL-TRPGVF-----------------YIGREDGNVDIWD
   WD 5  777-823    LLEKTHEPAQSQ--NICITMITYIKPWTFSS-KQ-QFI-----------------AVADYYGTLHILE

   WD40 Template    TGE-------CL--RTLSGHTSGVTSVSFSP-DG-KRL-----------------VSGSEDGTIKVWD