WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000124712 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000124712 (Len=1742) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000124712, Len=1742): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MWPAGAGTKLPCPRDSALRRAAFSGNLTALPSHLVPAGRSVRVFISANPEDTGAERQALRETVYPKLREFCRENYGLEFQ 80
WD40-rpts
Query 81 VIDLYWGIEEDEWDSPELQKMRMKLLEECLKTSAGPCFVGLLGEKYGNIRIPGEVEASEFEMILDAAVEAKLETKLLEDW 160
WD40-rpts
Query 161 YCRDENSVPAAYYLRPRLEVPRSNKNSTQPSASSEQERPWQEISDEIKTIFKAAVKLLHEQGKMKQSQAKRYLFSAIEDE 240
WD40-rpts
Query 241 FDFALGKQTPAFLKKCVCYIRKIANIERFVKIPEMGKYMDITGTDPRIVRDPEAQEKLIKLRDEFIPTIVASSNLRVYTS 320
WD40-rpts
Query 321 VTHCDMKLGYSQEIENHYIEGLGKQFYEDMIDIIQATVQQNFDTETDTLYDEILQHSSLCKTYASFYEYKCESLNILHKY 400
WD40-rpts
Query 401 ILPSKTGHINPLVVYGGPCTGKTLLLAEVAKKAYGWLHEDTGPDSDPVVIVRFLGTTDMSIDLRTLLLSVCEQLAVNYRC 480
WD40-rpts
Query 481 LVQSFPKKIHDLRDLFINLLNESSLQRPLVIILDALEQLSEADEARKLWWLPAHLPRFVRIILSTLPNKHGILQKLRCLI 560
WD40-rpts
Query 561 HEEDNYIELIPRDRKMCSQVLKHQLLRVKRKVTSGQQIYVNNAFSKCTLPMFVNLTFREVRHWRSHKDVDESSLCVTVHE 640
WD40-rpts
Query 641 SIEQLFWSLEKKCGQKLVSRALGYITMAKMGLSEMELEDVLALDNSVMNELNENTRPSNPLRVPYLYIARLKEGLNGYLI 720
WD40-rpts
Query 721 ERHVKNVTLLVWANRHLQLIAQKLYLQEDSNLREMHTILADYFLGVWSGGRRKAFCLEDPYLNGCLDLENRSLLEEEKHF 800
WD40-rpts
Query 801 MEQASFDRQAPDQPWVFQCNPLEPDIFFVNHRKMSELLYHLTRCGKTDDLLYGIIMNFSWLYTMIKIGQFDKVLADIELA 880
WD40-rpts
Query 881 YNYSQEKELKFLASTLRSIRNKVIAFPGSLSAELQQRLLPVVSSLPKLRHLLLECDKDGPKYCSIVPLHSSMDVTYSPER 960
WD40-rpts (___
Query 961 LPLASSHLHVTEILPTCNPSTVLTALENGSISTWDVETRQLLRQITTAQSVILGMKLSSDEKYLVVATTNNTLLIYDNVN 1040
WD40-rpts ______________WD 1________________) (_________________WD 2________________)
Query 1041 SCLLSEVEIKGTKHGSGSTYINGFTLSVNHALAWLEASKDVTVIDLLYGWPLYQFHCWYEVTCVQCSLDGVYAFCGQYLN 1120
WD40-rpts (________________WD 3_______________) (________________WD 4___________
Query 1121 NTTIFHLGSGEKICTVTSEFSGGFVKFLLILDTAQEMVMVDSEGSLSVWNTEDISNPQLTEDFDCRKEDSEVVSIELSED 1200
WD40-rpts _____) (__________________WD 5_________________)(____________________WD 6_____
Query 1201 QSAILICKALSIELLDTGMWKVAEKFRARHNERFVSAVLSKNGDCIIATMENTPAVFFWRRDTGQCLASLQESSGTIVKL 1280
WD40-rpts _______________)(___________________WD 7___________________) (________________
Query 1281 VKSSHHNMLLSLSTSGVLSIWDIDIITAMSNIDKTGKPIQSLVLPARGEIIYSLDGSDCVHKWNFSSGFIEAVFKHEGIV 1360
WD40-rpts _WD 8________________) (_________________WD 9________________)(_______________
Query 1361 EHCVLTSTGDLMVTSDDKSSQYVWHTSSGENLFRINGQRISQLLITHNDQFVVSLCEENASRVWRLATGHRVCNILTTLQ 1440
WD40-rpts ___WD10_________________)(_________________WD11_________________)(______________
Query 1441 NAFITSANTFVVGMTKSKVLAVSLWTGSITKKFCCEDGITIVNFKLIPDCPDVIVFITSAETVNLWSLTDEVICRRVQLP 1520
WD40-rpts __WD12________________) (__________________WD13_________________)(____________
Query 1521 SNFLKNLEDFEISPNGKLGIISRGDENINVLDLHSGKLRVVHASGVIWRQRLSRDGRYLVYICFRNGEEEEENDAISSLI 1600
WD40-rpts ________WD14___________________)(_________________WD15_________________)
Query 1601 VMRLADGKNIGACSLYKTPTFLALSQRHLNIIVGFDDGSIGIYTVVDRVDAALKIKIATSNSRQIFNNATQTSRPKSNSY 1680
WD40-rpts (________________WD16________________)
Query 1681 SFKVSVDCLWRESTEVFARDSPITVSDSSESNEATPSKKHNSCYDRVCAALESRSHSYTPDN 1742
WD40-rpts
 16 WD40-repeats found in QUERY=ENSMUSP00000124712 (Len=1742): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 14 957-995 6.20 370.76 0.00063 20.0% 51.18 WD 2: Seg 18 999-1037 7.87 439.58 7.4e-05 25.0% 54.27 WD 3: Seg 23 1049-1085 3.74 269.02 0.01466 10.0% 43.67 WD 4: Seg 26 1089-1126 5.86 356.65 0.00097 22.5% 55.04 WD 5: Seg 30 1130-1170 6.73 392.46 0.00032 25.0% 54.78 WD 6: Seg 34 1171-1216 5.06 323.72 0.00270 20.0% 41.97 WD 7: Seg 38 1217-1260 5.36 336.18 0.00183 17.5% 53.49 WD 8: Seg 42 1264-1302 8.61 470.46 2.8e-05 27.5% 56.51 WD 9: Seg 46 1306-1344 7.20 411.98 0.00017 10.0% 52.33 WD10: Seg 50 1345-1385 7.06 406.38 0.00021 15.0% 55.16 WD11: Seg 54 1386-1425 6.85 397.63 0.00027 15.0% 49.81 WD12: Seg 58 1426-1463 4.33 293.57 0.00687 12.5% 45.49 WD13: Seg 62 1467-1507 4.85 315.17 0.00352 15.0% 54.21 WD14: Seg 66 1508-1552 6.63 388.58 0.00036 22.5% 50.74 WD15: Seg 70 1553-1592 6.07 365.60 0.00074 12.5% 43.67 WD16: Seg 74 1607-1644 5.88 357.56 0.00094 20.0% 53.64Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 957-995 -SP-----ERL-------PLASSHL-H--VTEILPTCNPS-TV-LTALENGSISTWD WD 2 999-1037 -RQ-----LLR-------QITTAQS-V--ILGMKLSSDEK-YL-VVATTNNTLLIYD WD 3 1049-1085 IKG-------T-------KHGSGST-Y--INGFTLSVNH--AL-AWLEASKDVTVID WD 4 1089-1126 -GW-----PLY-------QFHCWYE----VTCVQCSLDGV-YA-FCGQYLNNTTIFH WD 5 1130-1170 -GE-----KIC-------TVTSEFS-GGFVKFLLILDTAQ-EM-VMVDSEGSLSVWN WD 6 1171-1216 TED-----ISNPQLTEDFDCRKEDS-E--VVSIELSEDQS-AI-LICK-ALSIELLD WD 7 1217-1260 TGM--WKVAEK-------FRARHNE-R--FVSAVLSKNGD-CIIATMENTPAVFFWR WD 8 1264-1302 -GQ-----CLA-------SLQESSG-T--IVKLVKSSHHN-ML-LSLSTSGVLSIWD WD 9 1306-1344 -IT-----AMS-------NIDKTGK-P--IQSLVLPARGE-II-YSLDGSDCVHKWN WD10 1345-1385 FSS----GFIE-------AVFKHEG-I--VEHCVLTSTGD-LM-VTSDDKSSQYVWH WD11 1386-1425 TSS-----GEN-------LFRINGQ-R--ISQLLITHNDQ-FV-VSLCEENASRVWR WD12 1426-1463 LAT-----GHR-------VCNILT-----TLQNAFITSAN-TF-VVGMTKSKVLAVS WD13 1467-1507 -GS-----ITK-------KFCCEDGIT--IVNFKLIPDCPDVI-VFITSAETVNLWS WD14 1508-1552 LTDEVICRRVQ-------LPSNFLK-N--LEDFEISPNGK-LG-IISRGDENINVLD WD15 1553-1592 LHS-----GKL-------RVVHASG-V--IWRQRLSRDGR-YL-VYICFRNGEEEEE WD16 1607-1644 -GK-----NIG-------ACSLYKT----PTFLALSQRHL-NI-IVGFDDGSIGIYT WD40 Template TGE-----CLR-------TLSGHTS-G--VTSVSFSPDGK-RL-VSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |