WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: ENSMUSP00000125092 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000125092 (Len=1399) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000125092, Len=1399): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 XNTQATDYLTTELCLEELERCQKTSIGPAFVALLGDQYGPCPVPRRIEEKEWEALRAQLTSRPRDLELVTRHFQRDDNTI 80
WD40-rpts
Query 81 PPTYVLQPSGSLVVPGPEEATLTSVLRGGAQEAWRLGLISQEQWMCYHRSVIEWEIELGLLSSARGDQGATVFLRDVQDL 160
WD40-rpts
Query 161 NKHILDDCSLKMVDRLVDGCLDTNAQSLLSGLKGRILDAQPGALKSHHLSWSRDLVNPKNKAHARYLKQLSEQFVARTNH 240
WD40-rpts
Query 241 QVLEQLRELELARQELGWLYQEIRHHLWQSTESTKVFCGHQELLAQLRQQLRQDESRTHTPLVLFGPPGIGKTSLMCKLA 320
WD40-rpts
Query 321 QQVPELLGHKTVVVLRLLGTSKLSLDARSLLRSLSFQVCLAYGLPLPPAQVLEAHSRVGHFFHTLLHTVSQRNFESLVLL 400
WD40-rpts
Query 401 LDSVDDLDSICHSPRVSWLPLKCPPRVHLILSTCSGQQVLHNLQQTLKDPSTYWEVKALSGSQGQEFIQLLLAAEKRMLS 480
WD40-rpts
Query 481 PGQRDVLWASLPECGHPGRLRLAFEEARKWASFTVPVPLATTAEEATHQLCIRLEETHGALLVAHVLGYIVSSRYGLSEA 560
WD40-rpts
Query 561 ELKDVLSLDDEVLQAVYRDWTPPSKELLRFPPLLWVRLRRDLGHCLVRRPVDGCMLLAIAHRQLSQVIQVRYLSGPERAK 640
WD40-rpts
Query 641 RHGVLAEFFSGAWSQGIKKLITLPLVGKPLNLDRKVAPQPLWFSSTVANLRKLTELPFHLLHAGRLEELKQEVLGNMSWI 720
WD40-rpts
Query 721 SCRGISGGIEVLLDDFDMCAPHMNSPEVDLVREAIQLCGPAVELRGLEKSVLYTELLARLLFFAASHPAMIGQLCQQAQS 800
WD40-rpts
Query 801 WFRACPYPMLVPLAGFLQPPGGPLRATLTGCHKGITAIAWSLEEKLLVVGTQDGAMVVWDVEEQQVVHVLMGHTAEVKCV 880
WD40-rpts (_________________WD 1________________) (________________
Query 881 RVFAQGTLAISASKDHTLRLWSLLSGQEKVTILDGGSQNPTEPQSWDLHVDERNNVVYSTSGARINMWNLETSKLVFCIT 960
WD40-rpts _WD 2________________) (___________________WD 3__________________) (_______
Query 961 GDVSDPWVCVALLAAQGLLLALSKGGQVSLWSSAMGKLQEKHQLSSIKEETPTCAVSIQSRARLVAGFSSGSIALVSAGE 1040
WD40-rpts __________WD 4_________________)(____________________WD 5___________________)(__
Query 1041 DRLLEKLPEAVGFLVVSEDDSLLVAGFGRFVRIFLADSQGFHRFMASDLEHEDMVETAVLGPENNLIITGSRDALIQVWS 1120
WD40-rpts ______________WD 6________________) (_________________WD 7________________)
Query 1121 LSEQGTLLNVLEGVGAPVSLLVRGGTLVVSASRKSSSFKVWDLKSTKKLQSPTPFLDRTGLAAVSHHGSFVYFPKVGDKN 1200
WD40-rpts (________________WD 8________________) (__________________WD 9____________
Query 1201 KVTIWDLAEGEEQDCLDTSNEVRCLEVAEQAKLLFTGLVSGIVLVFPLNSRQDVLCIPPPEARKAVNCMSLSKSENRLAI 1280
WD40-rpts _____)(__________________WD10_________________) (_________________WD11________
Query 1281 AYDNIVLVLDISPGDPCPAIEGPTYTFYTQLPETIVSVAVLADYRVVYGMSDGSLFLYDCACSKVFPLEAHGSRVSCVEV 1360
WD40-rpts _________) (____________________WD12____________________) (_________________W
Query 1361 SHSEQLAVSGAEDALLCLWDLQACRGMFEMSYEVGGLDN 1399
WD40-rpts D13________________)
 13 WD40-repeats found in QUERY=ENSMUSP00000125092 (Len=1399): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 10 822-860 8.81 478.66 2.2e-05 40.0% 54.75 WD 2: Seg 14 864-902 8.79 477.86 2.3e-05 30.0% 55.67 WD 3: Seg 18 907-949 4.31 292.69 0.00706 17.5% 39.26 WD 4: Seg 22 953-992 6.59 387.05 0.00038 17.5% 57.67 WD 5: Seg 26 993-1037 5.81 354.50 0.00104 22.5% 46.62 WD 6: Seg 30 1038-1075 5.75 352.24 0.00111 25.0% 47.33 WD 7: Seg 33 1082-1120 7.84 438.46 7.7e-05 22.5% 50.36 WD 8: Seg 37 1125-1162 5.56 344.47 0.00142 25.0% 51.70 WD 9: Seg 41 1166-1206 6.04 364.24 0.00077 12.5% 47.73 WD10: Seg 45 1207-1247 6.03 363.56 0.00078 17.5% 54.53 WD11: Seg 49 1251-1290 4.45 298.66 0.00586 20.0% 52.06 WD12: Seg 53 1294-1339 5.57 344.91 0.00140 30.0% 52.49 WD13: Seg 57 1342-1380 8.44 463.44 3.5e-05 32.5% 54.90Multiple sequence alignment of 13 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 822-860 -G----P-LRATLTGC--H--------KG-ITAIAW----SLEEK-LL--VVGTQDGAMVVWD WD 2 864-902 -Q----Q-VVHVLMGH--T--------AE-VKCVRV----FAQGT-LA--ISASKDHTLRLWS WD 3 907-949 -Q----E-KVTILDGG--S--------QN-PTEPQSWDLHVDERN-NV--VYSTSGARINMWN WD 4 953-992 -S----K-LVFCITGD--V--------SDPWVCVAL----LAAQG-LL--LALSKGGQVSLWS WD 5 993-1037 SAMGKLQ-EKHQLSSI--K--------EE-TPTCAV----SIQSRARL--VAGFSSGSIALVS WD 6 1038-1075 AG----E-D-RLLEKL--P--------EA-VGFLVV----SEDDS-LL--VAGF-GRFVRIFL WD 7 1082-1120 -H----R-FMASDLEH--E--------DM-VETAVL----GPENN-LI--ITGSRDALIQVWS WD 8 1125-1162 -G----T-LLNVLEGV--G--------AP-V-SLLV----RGGTL-VV--SASRKSSSFKVWD WD 9 1166-1206 -T----K-KLQSPTPF--L--------DR-TGLAAV----SHHGS-FVYFPKVGDKNKVTIWD WD10 1207-1247 LA----EGEEQDCLDT--S--------NE-VRCLEV----AEQAK-LL--FTGLVSGIVLVFP WD11 1251-1290 -R----Q-DVLCIPPPEAR--------KA-VNCMSL----SKSEN-RL--AIAY-DNIVLVLD WD12 1294-1339 -G----D-PCPAIEGP--TYTFYTQLPET-IVSVAV----LADY--RV--VYGMSDGSLFLYD WD13 1342-1380 -C----S-KVFPLEAH--G--------SR-VSCVEV----SHSEQ-LA--VSGAEDALLCLWD WD40 Template TG----E-CLRTLSGH--T--------SG-VTSVSF----SPDGK-RL--VSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |