WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: gi_186680556_ref_YP_001863752.1_ [Nostoc punctiforme PCC 73102] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = gi_186680556_ref_YP_001863752.1_ (Len=2012) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (gi_186680556_ref_YP_001863752.1_, Len=2012): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSDSYQPEDVVVYNERSLKKLIRSITNSQGHFALILARCNYCSLRDQMVQQIKEECQVEIRELHLSKSIKTLYTTIEANL 80
WD40-rpts
Query 81 GNQLPQALMIFDLELVDAIDQLLISTNQVREEFRKNFQFPIVIWVNDPTFQKLIQLMPDFKSWTGNSIKFKIATNQLINN 160
WD40-rpts
Query 161 LHQIVNSLFAAILNVGAGKFLDNAYLNLDLGILHLGEIESAVRDLQISIEKLEPELEASLQFLLGREADANGHKSEAKNY 240
WD40-rpts
Query 241 YEQSITVWEKKVKNKQNVSSDDLKRYGCLLWHLGFWWEQYAILHRSEYYEACLKAKDYFQKCVEGFRQHKYPNLAAKFIN 320
WD40-rpts
Query 321 AWGEVLTRLEAWDELEKVALVAIELHQIYPEPIRLGYSYGLMAEVVLKKSQWVEAKEYAELALQTNANISSEEIINWEWE 400
WD40-rpts
Query 401 RKSYKNLYLLLLAEAEQNLNQIPEAIANLETARSESNPQHDPLLYIRILAKLRSLYFDQGNYLEAFQVKLEQRSIEQQYG 480
WD40-rpts
Query 481 LRAFVGAGRLQSKLQVINPGLAVPDPKAAVTQEIAASGRMQDVNRLIERISRDDHKLTVIYGQSGVGKSSLVQAGLLPAL 560
WD40-rpts
Query 561 KQRAIDARDVVPVLLQVYTDWTKVLGTCFVESLEEVRGLSFPLFLDSMAGFVEELNKNIEKGLLTVLIFDQFEEFFFAYK 640
WD40-rpts
Query 641 DQDKRRPFFEFIRDCLNIPYVKIILSLREDYLHYLLECNRLTHLDAIDNNILDKKILYYLGNFSPEDARSVIQSLTESSQ 720
WD40-rpts
Query 721 FYLEPPLIDELVRDLARDFNEIRPIELQVVGAQLQTEKITTLIQYQEQGPKEKLVGRFLEEVVKDCGNNNEQFAKLVLYL 800
WD40-rpts
Query 801 LTDENNTRPLKNRAELEADLALEPARLDLILKILVKSGLVFQVPGFPADRYQLVHDYLVPFVREQQSARLIAELEKEKEQ 880
WD40-rpts
Query 881 RKLTEAKLNQVLTQQLRTARKQTVTLIGLITAISVIAVGVTAAYINTSLTSDISSKDDIGLGELVSAIKVGKKLKFLSIG 960
WD40-rpts (________________________________WD 1____________
Query 961 VIPETRLKVISNLSNAIHKIKEINRIEGYDKAITALSFSQDSKMLATASEDGKVKILNISDGQERIWSAHKKSVTSISFN 1040
WD40-rpts ____________________)________________WD 2________________) (_________________WD
Query 1041 SDGKMLATVSEDGNAKIWNIPERKSWSTPKFKPIKILKIDKDGLGFITFSPNDKLLATTTKNKTVKIWSWEDGKLKSLPQ 1120
WD40-rpts 3________________) (_________________WD 4________________) (_______
Query 1121 RFNDKNIIVNFSPDNKTVATGGRYDTVKLWKLTPKKLENKPTEIYDSGTFTMNFNNSGDAISLFNKQGNLRVWSTDDKPH 1200
WD40-rpts __________WD 5________________) (________________WD 6________________)
Query 1201 LIKSAENVCKNSFGLKDFLNNSLDNQLSIFQDSEDKKTFFETIIFQGQCSNYNIFKHDDSITYTSFSPDSKLLASASKDG 1280
WD40-rpts (_________________WD 7___________
Query 1281 VVKIWDIDDNKLPSFQRTDRDEDINRKIRFSFDGQTVALGSSDNSIELQNRDGTHIKTIRGDSSILSFSPDNQTLATGSP 1360
WD40-rpts _____)(___________________WD 8___________________) (_______________WD 9________
Query 1361 DDILKLWKLDTNKEITLKGSTNKITTIDFSPDGNLVAAASADNFVRLWRSSDGTFIGHLKGNTKQVTNVSFSPNSQIIAT 1440
WD40-rpts _______) (_________________WD10________________) (_________________WD11______
Query 1441 ISDDNKVQLWNSRDRSLIQALKTDSDKVTTVIFSHDSKMLAICDDNLVKLYKSDGTPVKPLIGHNAKVQSVEFSPDDKKL 1520
WD40-rpts __________) (________________WD12________________) (_________________WD13____
Query 1521 MSVSANSGEIKIWDISNSEPLQSIDNYGMISAKFNPNGKYITSINQNYTVKLWTVEGEPRATLKGHNDTITKVDFSHDGT 1600
WD40-rpts _____________)(_________________WD14_________________) (_________________WD15__
Query 1601 KIVTSSADNTIKIWDINQLLLKKYNYEPLTLQKHIKGVNDVAFSFDNKYIASASADNTVNIYNGNGNFIKQLSGFSNGIN 1680
WD40-rpts ______________)(_____________________WD16_____________________) (______________
Query 1681 DDISIDKVSFSSDGKIIGATSCKTYWSNEIYRSKYVMKFWSIEDSAKFQELKSIKGHANFSCNNIDSFIRFSLNKKTVAS 1760
WD40-rpts ___________WD17_________________________) (___________________WD18_________
Query 1761 VSKDDSLKLWDLKGKPLATLWGHTDWVNSVAFSPNKKIIASASDDKTVRFWNRNGKLLKPIIKHGDKVNSVSFTHDGKII 1840
WD40-rpts __________) (_________________WD19________________) (_________________WD20____
Query 1841 ASASDDQIIRLWNLDGKLQKPTIRDPDKITNIRFQADDKKIAFISGSSAKLGNLDNGKIEPLKTDYSSNTLSFDNDNKML 1920
WD40-rpts ____________) (________________WD21________________)(___________________WD22___
Query 1921 AVGSDYNTGLYFLNSWFTKDPYLLYPISSFLGERFNLNTNKTIELNSNEGKIYLNNNLDDLLKRACKLASGYLKNNPNMK 2000
WD40-rpts ________________) (_______________WD23_______________)
Query 2001 NDRTLCDDINTQ 2012
WD40-rpts
 23 WD40-repeats found in QUERY=gi_186680556_ref_YP_001863752.1_ (Len=2012): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 12 912-981 2.93 235.72 0.04067 12.5% 38.27 WD 2: Seg 15 981-1018 8.18 452.37 5.0e-05 32.5% 55.81 WD 3: Seg 19 1021-1059 9.51 507.62 9.0e-06 45.0% 55.23 WD 4: Seg 23 1071-1109 8.50 465.77 3.3e-05 25.0% 52.52 WD 5: Seg 27 1113-1151 9.03 487.85 1.7e-05 27.5% 53.94 WD 6: Seg 31 1157-1194 8.05 447.06 5.9e-05 17.5% 49.33 WD 7: Seg 39 1248-1286 9.54 508.77 8.6e-06 40.0% 48.74 WD 8: Seg 42 1287-1330 7.52 425.20 0.00012 20.0% 54.36 WD 9: Seg 46 1333-1368 7.50 424.29 0.00012 35.0% 49.01 WD10: Seg 50 1371-1409 8.94 483.90 1.9e-05 32.5% 55.96 WD11: Seg 54 1413-1451 9.66 513.78 7.4e-06 35.0% 57.97 WD12: Seg 58 1455-1492 7.23 413.31 0.00017 27.5% 51.14 WD13: Seg 62 1495-1534 8.86 480.59 2.1e-05 50.0% 55.85 WD14: Seg 66 1535-1574 8.15 451.16 5.2e-05 27.5% 51.68 WD15: Seg 70 1577-1615 10.35 542.04 3.1e-06 50.0% 57.72 WD16: Seg 74 1616-1663 8.42 462.45 3.6e-05 37.5% 48.75 WD17: Seg 77 1666-1721 5.68 349.12 0.00123 37.5% 53.08 WD18: Seg 81 1728-1771 6.97 402.53 0.00023 30.0% 47.26 WD19: Seg 85 1774-1812 9.96 526.18 5.0e-06 47.5% 54.57 WD20: Seg 89 1815-1853 9.66 513.55 7.4e-06 40.0% 56.42 WD21: Seg 93 1856-1893 6.27 373.68 0.00057 17.5% 53.49 WD22: Seg 97 1894-1937 5.82 354.93 0.00102 22.5% 48.57 WD23: Seg101 1941-1976 4.93 318.43 0.00318 15.0% 38.14Multiple sequence alignment of 23 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 912-981 AIS----VI--------AVGVTAAYINTSLTSDISSKDDIGLGELVSAIKVGKKLK------FLS-----IGVIPETRLKVISN-----------LS-NA----IHKIK WD 2 981-1018 --K----EI--------NRI------------------------------EGYDKA------ITA-----LSFSQDSKMLATAS-----------ED-GK----VKILN WD 3 1021-1059 -DG----QE--------RIW------------------------------SAHKKS------VTS-----ISFNSDGKMLATVS-----------ED-GN----AKIWN WD 4 1071-1109 -FK----PI--------KIL------------------------------KIDKDG------LGF-----ITFSPNDKLLATTT-----------KN-KT----VKIWS WD 5 1113-1151 -GK----LK--------SLP------------------------------QRFNDK------NII-----VNFSPDNKTVATGG-----------RY-DT----VKLWK WD 6 1157-1194 --L----EN--------KPT------------------------------EIYDSG------TFT-----MNFNNSGDAISLFN-----------KQ-GN----LRVWS WD 7 1248-1286 -QC----SN--------YNI------------------------------FKHDDS------ITY-----TSFSPDSKLLASAS-----------KD-GV----VKIWD WD 8 1287-1330 IDDNKLPSF--------QRT------------------------------DRDEDI------NRK-----IRFSFDGQTVALGS-----------SD-NS----IELQN WD 9 1333-1368 -GT----HI--------KTI------------------------------RGD---------SSI-----LSFSPDNQTLATGS-----------PD-DI----LKLWK WD10 1371-1409 -TN----KE--------ITL------------------------------KGSTNK------ITT-----IDFSPDGNLVAAAS-----------AD-NF----VRLWR WD11 1413-1451 -GT----FI--------GHL------------------------------KGNTKQ------VTN-----VSFSPNSQIIATIS-----------DD-NK----VQLWN WD12 1455-1492 -RS----LI--------QAL------------------------------KTDSDK------VTT-----VIFSHDSKMLAICD------------D-NL----VKLYK WD13 1495-1534 -GT----PV--------KPL------------------------------IGHNAK------VQS-----VEFSPDDKKLMSVS-----------ANSGE----IKIWD WD14 1535-1574 ISN----SE--------PLQ------------------------------SIDNYG------MIS-----AKFNPNGKYITSIN-----------QN-YT----VKLWT WD15 1577-1615 -GE----PR--------ATL------------------------------KGHNDT------ITK-----VDFSHDGTKIVTSS-----------AD-NT----IKIWD WD16 1616-1663 INQ----LLLKKYNYEPLTL------------------------------QKHIKG------VND-----VAFSFDNKYIASAS-----------AD-NT----VNIYN WD17 1666-1721 -GN----FI--------KQL------------------------------SGFSNGINDDISIDK-----VSFSSDGKIIGATSCKTYWSNEIYRSK-YV----MKFWS WD18 1728-1771 -FQ----EL--------KSI------------------------------KGHANF------SCNNIDSFIRFSLNKKTVASVS-----------KD-DS----LKLWD WD19 1774-1812 -GK----PL--------ATL------------------------------WGHTDW------VNS-----VAFSPNKKIIASAS-----------DD-KT----VRFWN WD20 1815-1853 -GK----LL--------KPI------------------------------IKHGDK------VNS-----VSFTHDGKIIASAS-----------DD-QI----IRLWN WD21 1856-1893 -GK----LQ--------KPT------------------------------IRDPDK------ITN-----IRFQADDKKIAFIS------------G-SS----AKLGN WD22 1894-1937 LDN----GK--------IEP------------------------------LKTDYS------SNT-----LSFDNDNKMLAVGS-----------DY-NTGLYFLNSWF WD23 1941-1976 -PY----LL--------YPI------------------------------SSFLGE------RFN-----L---NTNKTIELNS-----------NE-GK----IYLNN WD40 Template TGE----CL--------RTL------------------------------SGHTSG------VTS-----VSFSPDGKRLVSGS-----------ED-GT----IKVWD |
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