Input parameters:

  Query = gi_186680608_ref_YP_001863804.1_ (Len=226)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186680608_ref_YP_001863804.1_, Len=226):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFTGLIQALGTIEPLGGDSWQITCVSHSGEVIMQDLAYGDSVAVDGVCLTVEKVLKDGFIATASPETLRRTTLGGEQTQQ 80  
WD40-rpts                                                  (_______________________________WD 1

Query       81 RYVNLEASLKVGSKVGGHFVMGHVDGIGRLLVAEQTASSWEMTFIASDAIARYIVPKGSIAVNGISLTVAAYDSELSQFK 160 
WD40-rpts      _______________________________)                                                

Query      161 VAVIPLTYSETNLRYLVAGSLVNLEGDILGKYVEKFLYSGNPNTTVHDETSLDGITPAFLAEHGYL 226 
WD40-rpts                                                                        

1 WD40-repeats found in QUERY=gi_186680608_ref_YP_001863804.1_ (Len=226):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    45-112      3.16  245.19  0.03047       25.0%     41.53

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   45-112    DGVCLTVEKVLKDGFIATASPETLRRTTLGGEQTQQRYVNLEASLKVGSKVGGHFVMGHVDGIGRLLV

   WD40 Template    TGECLRTLSGHTSGVTSVSF----------------------------SPDGKRLVSGSEDGTIKVWD