Input parameters:
Query = gi_186680639_ref_YP_001863835.1_ (Len=210)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186680639_ref_YP_001863835.1_, Len=210):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MMLNNFETDSIFTPEQVLENRGRVAIFIDGSNLFYAALQLGIEIDYTKLLCRLTGGSRLLRSFFYTGVDRTNEKQQGFLL 80
WD40-rpts
Query 81 WMRRNGYRVIAKDLVQLPDGSKKANLDVEIAVDMMALVDSYDTAVLVSGDGDLAYAVNSVSYRGVRVEVVSLRSMTSDSL 160
WD40-rpts (______________________________WD 1_____________________________)
Query 161 INVSDRYIDLEAIKEDIQKTPRQSYPYRPLSGIGFLEDPRTSDGHLEIQE 210
WD40-rpts
1 WD40-repeats found in QUERY=gi_186680639_ref_YP_001863835.1_ (Len=210):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 85-149 3.14 244.46 0.03116 22.5% 17.42
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 85-149 NGYRVIAKDLVQLPDGSKKANLDVEIAVDMMALVDSYDTAVLVSGDGDLAYAVNSVSYRGVRVEV
WD40 Template TGECLRTLSGHTSGVTSVSFSP---------------DGKRLVSGSED----------GTIKVWD