Input parameters:

  Query = gi_186680689_ref_YP_001863885.1_ (Len=1716)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186680689_ref_YP_001863885.1_, Len=1716):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVERHPQADIRAANERALRSLGRAIALSSGQFSLVLVCCNYRVLQELMLQRLEELSSGVHHIQKVILPHNARSLYTSIHL 80  
WD40-rpts                                                                                      

Query       81 QLVTEENPPSALMILGLESVDGIDDLLRSINHIRDEFRKRHPFPMILWVNEEVLQKVVRLAPDFASWAATPIRFEMTTQS 160 
WD40-rpts                                                                                      

Query      161 LRQFLQQETDSLFATVLPSDAGQHQPPQVAKHYFTVEQVWKNSYELHFAIGELHDRGITLEPELHASLEFVFGLDNYISD 240 
WD40-rpts                                                                                      

Query      241 RINTALSHFQQSLQVWQKLEEIGGAGERGSGGAGEQGDERVFSSSTPPNRPSPLLLRQGVLLFYIGLCYCRLAEQNQIEN 320 
WD40-rpts                                                                                      

Query      321 RRHWYTAKFYFQQCLNVLQVAGRLDIVAGFISQLAEVLQYLQEWEELQTVAQKSLELHQTYGSQIQLACDYGFLAQVAVQ 400 
WD40-rpts                                                                                      

Query      401 QSRWIQASILAHVSLLKLGEAQKHNDPYNCLFPLLLAQIYYLVLAKAQRNLGELVIAHEYLEKATKELPAALESSAHQYD 480 
WD40-rpts                                                                                      

Query      481 AHRYIRLLRTLRSLYFEEGRYLEAYYIRQKRRSVEQQYGFRAFIGAGRLQPQRQATNPALMAPSGSSSVALEIAASGRER 560 
WD40-rpts                                                                                      

Query      561 DINNLIGRISRADQKLTVIHGQSGVGKSSTVTAGLVPALQNRAIGDQIAVPVVLQVYTDWARELEKSLSQAMSSDASLAV 640 
WD40-rpts                                                                                      

Query      641 YAEIKLEANIEAAEVLPYSPTPITIVRILQQLQQNADNHLITVLIFDQFEEFFFGYSDRKQKQEFDKFISDCLNIPFVKV 720 
WD40-rpts                                                                                      

Query      721 ILSLREDYLHRLLDFKHLSALEAINNNILDKHIRYQLNNFSPEYAKAIIQKLTERSQFNLEPALIDALIEDLSTEFGEVR 800 
WD40-rpts                                                                                      

Query      801 PIELQVVGAQIQDERITTLEEYQPYRPNKLIERYLKELIKDCGPENERAALLVLYLLTDESNNRPFKTRAELAAQLAELE 880 
WD40-rpts                                                                                      

Query      881 DASKLELVLDILVSSGLVVLFPDVPERYQLIHDYLVDLIRYLQQQESSLQVQLNQLRHKVEQSKAEIERLKSELSQKKQR 960 
WD40-rpts                                                                                      

Query      961 STLADSHPQQGLDLLTELRELHKREELSQLQIEQLRAELKEKELTAKLAESQKKQRLSEAQLNRSLKIALTASVLAILGL 1040
WD40-rpts                                                                                      

Query     1041 SVSIVTAVDSEIKTLSASSEALFASQKGIDSLKEGLRAGRKLQQIVWVDSYTREQVQTALYQAVSGLREYNRLEGHLSGV 1120
WD40-rpts                                                                    (_________________

Query     1121 NNATFSPDRSLIASASADTTIKLWLPDGSLFKTLSGHEDVVNSVSFSPDGQIIASASQDKTVKLWSREGVLLVTLLGHQG 1200
WD40-rpts      __WD 1__________________)  (_________________WD 2________________)  (___________

Query     1201 VVNSVSFSPDGQIIASASTDKTVKLWSRDGKLLKTLPGHDGAVLSVAWSTDGQTIASGSADKTVKLWSRDGKLLKTLQGH 1280
WD40-rpts      ______WD 3________________)  (_________________WD 4________________)  (_________

Query     1281 EDAVKSVAWSTDGQTIASASLDQTIKLWNLEGKLLRTLSGHSAGVTSVSFSRDGNTIASASTDETIKLWSFEGVLLGTLK 1360
WD40-rpts      ________WD 5________________)  (_________________WD 6________________)  (_______

Query     1361 GHNNWVNSVSFSPDGRTLASASRDKTIKLWHWDDVLLRKPKADNDDWITSISFSPDDRTLAAGSRDKTIKLFSREGKLLR 1440
WD40-rpts      __________WD 7________________)   (_________________WD 8________________)  (____

Query     1441 ILTGHQGQVWGVSFSPDGQAIASASKDQTVKLWGADGKLLNTLQGHNSTVLSVAWSPNSQIIASASKDQTVKLWSRDGKL 1520
WD40-rpts      _____________WD 9________________)  (_________________WD10________________)  (__

Query     1521 LNTLQGHKDAVNWVSFSPDGKLLASASDDKTVKIWSLDGKLLYTLIGHSRRVNGVSWSPDSQVIASVSIDSTVQLWSRDG 1600
WD40-rpts      _______________WD11________________)  (_________________WD12________________)  (

Query     1601 GLLNTLTGDGDSFISVSFSPDGKTLAASSDDKIRIWNREGTLLIALKGYEAELTSVSFSPDGKTLAAGSGNGTVIFQNLA 1680
WD40-rpts      ________________WD13________________)  (_________________WD14________________)  

Query     1681 DIQLEKLLARGCYLLYDYLQTNQKVMKGDRALCSSR 1716
WD40-rpts                                          

14 WD40-repeats found in QUERY=gi_186680689_ref_YP_001863885.1_ (Len=1716):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15  1103-1145     8.81  478.57  2.2e-05       47.5%     49.14
  WD 2:  Seg 19  1148-1186    10.70  556.64  2.0e-06       52.5%     57.10
  WD 3:  Seg 23  1189-1227    10.35  542.11  3.1e-06       52.5%     57.19
  WD 4:  Seg 27  1230-1268    10.51  548.78  2.5e-06       47.5%     54.72
  WD 5:  Seg 31  1271-1309    10.23  537.25  3.6e-06       47.5%     56.25
  WD 6:  Seg 35  1312-1350    10.89  564.54  1.5e-06       62.5%     54.96
  WD 7:  Seg 39  1353-1391    10.58  551.56  2.3e-06       57.5%     56.94
  WD 8:  Seg 43  1395-1433     8.93  483.72  1.9e-05       35.0%     48.18
  WD 9:  Seg 46  1436-1474    10.19  535.52  3.8e-06       50.0%     56.46
  WD10:  Seg 50  1477-1515    10.05  529.91  4.5e-06       45.0%     54.39
  WD11:  Seg 54  1518-1556    10.65  554.48  2.1e-06       55.0%     52.31
  WD12:  Seg 58  1559-1597     9.70  515.27  7.1e-06       42.5%     55.69
  WD13:  Seg 62  1600-1637     8.56  468.17  3.0e-05       47.5%     50.81
  WD14:  Seg 66  1640-1678     9.71  515.67  7.0e-06       47.5%     56.79

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1103-1145   AVSGLREYNRLEGHLSGVNNATFSPDRSLIASASADTTIKLWL
   WD 2 1148-1186   -GSLFK---TLSGHEDVVNSVSFSPDGQIIASASQDKTVKLWS
   WD 3 1189-1227   -GVLLV---TLLGHQGVVNSVSFSPDGQIIASASTDKTVKLWS
   WD 4 1230-1268   -GKLLK---TLPGHDGAVLSVAWSTDGQTIASGSADKTVKLWS
   WD 5 1271-1309   -GKLLK---TLQGHEDAVKSVAWSTDGQTIASASLDQTIKLWN
   WD 6 1312-1350   -GKLLR---TLSGHSAGVTSVSFSRDGNTIASASTDETIKLWS
   WD 7 1353-1391   -GVLLG---TLKGHNNWVNSVSFSPDGRTLASASRDKTIKLWH
   WD 8 1395-1433   -VLLRK---PKADNDDWITSISFSPDDRTLAAGSRDKTIKLFS
   WD 9 1436-1474   -GKLLR---ILTGHQGQVWGVSFSPDGQAIASASKDQTVKLWG
   WD10 1477-1515   -GKLLN---TLQGHNSTVLSVAWSPNSQIIASASKDQTVKLWS
   WD11 1518-1556   -GKLLN---TLQGHKDAVNWVSFSPDGKLLASASDDKTVKIWS
   WD12 1559-1597   -GKLLY---TLIGHSRRVNGVSWSPDSQVIASVSIDSTVQLWS
   WD13 1600-1637   -GGLLN---TLTGDGDSFISVSFSPDGKTLAASS-DDKIRIWN
   WD14 1640-1678   -GTLLI---ALKGYEAELTSVSFSPDGKTLAAGSGNGTVIFQN

   WD40 Template    TGECLR---TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD