Input parameters:

  Query = gi_186680698_ref_YP_001863894.1_ (Len=492)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186680698_ref_YP_001863894.1_, Len=492):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDRFDINHVYNILGLKPGASVDEVKQAYRQMAKTWHPDCFFEPQQKLEAEEKIKEINQAYARLKSYQPDETNQSASTSI 80  
WD40-rpts                                                                                      

Query       81 KIDFTPSNAESFYKLGIEKAQKEKYTEAIEDFTQAIRLNPNYFEAYKYRGLACSKLGYENRAESDFRNSIQLELKQKKAA 160 
WD40-rpts                                                                                   (__

Query      161 PKPTSPPPKPATPPPPKPTSPPPKPATPPPPKSESQPSPWKCVHTLTHLNWVFTTAISPDGKTLASGSSDNTIKIWHLDT 240 
WD40-rpts      _______________WD 1________________)         (_____________WD 2_____________)   

Query      241 GKLLHTLTSHTKWVRCLAFSPDSQTLVSGSDDSTLMIWQVSTGKLLKTLKVHSTPVFSVIISPDGQTILSGGTDSTIKIS 320 
WD40-rpts      (_________________WD 3________________)   (_________________WD 4________________

Query      321 HIEMGQLLQVLKGHSGLVYSLAICPKQQIFVSGGADNTIKLWNLKSNKLLQTLNGHSGWVMCVAISPDGKILASSSYDQT 400 
WD40-rpts      )   (_________________WD 5________________)   (_________________WD 6____________

Query      401 IKLWNINTGKVINTLAGHCSYVCAIAFSPVGQYLASGSADHSVKLWDVNTGQELYTLNNHSDWVNSVTFSPDSKTLASGS 480 
WD40-rpts      ____)   (_________________WD 7________________)   (_________________WD 8________

Query      481 RDMTIKLWQCDI 492 
WD40-rpts      ________)   

8 WD40-repeats found in QUERY=gi_186680698_ref_YP_001863894.1_ (Len=492):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   158-196      6.28  373.94  0.00057        7.5%     -26.68
  WD 2:  Seg  5   206-237      8.23  454.43  4.7e-05       40.0%     46.48
  WD 3:  Seg  8   241-279     10.94  566.67  1.4e-06       47.5%     56.76
  WD 4:  Seg 12   283-321     10.48  547.70  2.6e-06       45.0%     56.11
  WD 5:  Seg 16   325-363     10.26  538.56  3.4e-06       40.0%     55.32
  WD 6:  Seg 20   367-405     10.67  555.54  2.0e-06       50.0%     53.51
  WD 7:  Seg 24   409-447     10.87  563.70  1.6e-06       47.5%     56.32
  WD 8:  Seg 28   451-489     10.80  560.68  1.7e-06       55.0%     54.64

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  158-196    KAAPKPTSPPPKPATPPPPKPTSPPPKPATPPPPKSESQ
   WD 2  206-237    -------LTHLNWVFTTAISPDGKTLASGSSDNTIKIWH
   WD 3  241-279    GKLLHTLTSHTKWVRCLAFSPDSQTLVSGSDDSTLMIWQ
   WD 4  283-321    GKLLKTLKVHSTPVFSVIISPDGQTILSGGTDSTIKISH
   WD 5  325-363    GQLLQVLKGHSGLVYSLAICPKQQIFVSGGADNTIKLWN
   WD 6  367-405    NKLLQTLNGHSGWVMCVAISPDGKILASSSYDQTIKLWN
   WD 7  409-447    GKVINTLAGHCSYVCAIAFSPVGQYLASGSADHSVKLWD
   WD 8  451-489    GQELYTLNNHSDWVNSVTFSPDSKTLASGSRDMTIKLWQ

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD