Input parameters:

  Query = gi_186680797_ref_YP_001863993.1_ (Len=581)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186680797_ref_YP_001863993.1_, Len=581):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGGIAAKLASKSAEFQNLFLGQFPEQQLKVGNSKKYYETLTDFDFISLKIQYPQFGVETLIRDYYLIDDPEILDRLEEDE 80  
WD40-rpts                                                     (_________________WD 1___________

Query       81 RVDYGQVKTLKLIERTLQLSAHILNQDPNQLVGQLWGRLQSFPEPEIQKILVDAVQSKSENPRFYPITATLTTPGGNLLR 160 
WD40-rpts      _____)                                                                     (____

Query      161 TLTGHKASVNVVAITSDGQTAVSTSDDNTLKVWDLQTGKETFTLSGHQASVNAVAITPDGQTIISVSNNLKLWSLKTGKE 240 
WD40-rpts      _____________WD 2________________)   (________________WD 3_______________)   (__

Query      241 ISTLTGHNNSINSVAITPDGQTAVSASSDNTLKLWTLKLWTLKLWNVETRRETFTLRGHRGLVNAVAITPDGKKAVSVSN 320 
WD40-rpts      _______________WD 4________________)             (________________WD 5__________

Query      321 NLKLWNLKTGWQISTLTGHKDSINAVAITPDGQKAVSASSDTNLKLWDLETGKAISTLRGHTDSVNAVAIIPDRQTAVSG 400 
WD40-rpts      _____)   (_________________WD 6________________)   (_________________WD 7_______

Query      401 SADTTLKLWDLQTGNVISTLSGHKDSVTAVAITPDGKKAVSGSADTTLKLWDLQTGKAISTLSGHKDSVTAVAITPDGKK 480 
WD40-rpts      _________)   (_________________WD 8________________)   (_________________WD 9___

Query      481 AVSGSADTTLKLWDLQTEKAISTLSGHKDSVTAVAITPDGQKAVSSSTDTTLKLWDLETGKVISTFTGESSIYCCTVSPD 560 
WD40-rpts      _____________)   (_________________WD10________________)   (________________WD11

Query      561 GLTFLIGEHSGRVHFLHLEGG 581 
WD40-rpts      ________________)    

11 WD40-repeats found in QUERY=gi_186680797_ref_YP_001863993.1_ (Len=581):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    48-86       6.47  382.06  0.00044       12.5%     31.02
  WD 2:  Seg  6   156-194     10.73  557.80  1.9e-06       50.0%     52.83
  WD 3:  Seg 10   198-234      8.07  447.82  5.7e-05       37.5%     53.35
  WD 4:  Seg 14   238-276     10.29  539.65  3.3e-06       42.5%     55.33
  WD 5:  Seg 18   290-326      7.38  419.34  0.00014       37.5%     52.49
  WD 6:  Seg 22   330-368     10.23  537.44  3.5e-06       40.0%     58.14
  WD 7:  Seg 26   372-410     10.39  543.97  2.9e-06       47.5%     58.01
  WD 8:  Seg 30   414-452     10.93  566.12  1.5e-06       55.0%     55.44
  WD 9:  Seg 34   456-494     11.01  569.38  1.3e-06       55.0%     56.79
  WD10:  Seg 38   498-536     10.63  553.96  2.1e-06       47.5%     54.70
  WD11:  Seg 42   540-577      7.68  431.99  9.4e-05       25.0%     51.98

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   48-86     LKIQYPQFGVETLIRDYYLIDDPEILDRLEEDERVDYGQ
   WD 2  156-194    GNLLRTLTGHKASVNVVAITSDGQTAVSTSDDNTLKVWD
   WD 3  198-234    GKETFTLSGHQASVNAVAITPDGQTIISVSNN--LKLWS
   WD 4  238-276    GKEISTLTGHNNSINSVAITPDGQTAVSASSDNTLKLWT
   WD 5  290-326    RRETFTLRGHRGLVNAVAITPDGKKAVSVSNN--LKLWN
   WD 6  330-368    GWQISTLTGHKDSINAVAITPDGQKAVSASSDTNLKLWD
   WD 7  372-410    GKAISTLRGHTDSVNAVAIIPDRQTAVSGSADTTLKLWD
   WD 8  414-452    GNVISTLSGHKDSVTAVAITPDGKKAVSGSADTTLKLWD
   WD 9  456-494    GKAISTLSGHKDSVTAVAITPDGKKAVSGSADTTLKLWD
   WD10  498-536    EKAISTLSGHKDSVTAVAITPDGQKAVSSSTDTTLKLWD
   WD11  540-577    GKVISTFTGESS-IYCCTVSPDGLTFLIGEHSGRVHFLH

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD