Input parameters:
Query = gi_186680833_ref_YP_001864029.1_ (Len=701)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186680833_ref_YP_001864029.1_, Len=701):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNQVATNFRARRPNPRSGDHRQGRKKARTSKKWLYLRAIRDAFVKLNPKYVIKNPVIFVVWVGTIIILLLTIDPNLFGPA 80
WD40-rpts
Query 81 LQKKPQLFNGLLSGILFFTVWFANFAEALAEGRGKAQADALRLTKSEAIAKKLAPDGTISEVSSTNLKKGDNIYVVAGDI 160
WD40-rpts
Query 161 IPGDGEVIMGVASVDESAITGESAPVLKESGSDVSSSVTGGTRIISDELIIRITTDPGKGFIDRMIGLVEGAERSKTPNE 240
WD40-rpts
Query 241 IALTVLLAVLSLVFLLVVVTLPALAYYVNSPVSVPTLIALLVALIPTTIGGLLSTIGIAGMDRVAQFNVIATSGKAVEAC 320
WD40-rpts
Query 321 GDVNTLVLDKTGTITLGNRLAEEFIPINGHSMSEIANVAWAASFFDNTPEGKSIIRLAEKLGARFDFDSNQAEGVDFSAK 400
WD40-rpts
Query 401 TRMSGTNLPGGYEARKGAVEAIKGFVRSRNGRDTPELDAAYERVSRLGGTPLAVSLDNEIYGVIYLKDIVKPGIRDRFEQ 480
WD40-rpts
Query 481 LRRMGVRTIMLTGDNQITASVIAKEAGVDDFIAEATPEDKISVIKKEQAAGKLVAMTGDGTNDAPALAQANVGVAMNTGT 560
WD40-rpts (_________________________________________WD 1_______________________________
Query 561 QAAKEAANMVDLDSDPTKLIDIISIGKQLLITRGALMTFSIANDIAKYFAIIPVIFVAANLQSLNIMNLTSSKSAVLSAL 640
WD40-rpts __________)
Query 641 IYNALIIPALIPLALKGVRFRPLTANQLLQRNILIYGLGGVIAPFIAIKLIDILITIVGLA 701
WD40-rpts
1 WD40-repeats found in QUERY=gi_186680833_ref_YP_001864029.1_ (Len=701):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 12 484-571 3.52 259.96 0.01937 22.5% 41.06
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 484-571 MGVRTIMLTGDNQITASVIAKEAGVDDFIAEATPEDKISVIKKEQAAGKLVAMTGDGTNDAPALAQANVGVAMNTGTQAAKEAANMVD
WD40 Template TGECLRTLSGHT-----------SGVTSVSFSPD------------GKRLVSGSEDGTIK-------------------------VWD