Input parameters:

  Query = gi_186680883_ref_YP_001864079.1_ (Len=1218)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186680883_ref_YP_001864079.1_, Len=1218):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDIDQALAFTDALVFAKSRIHLSDLQQAMLRESWSLERQSYDRIADIYGYSPTYLKHDVGPKLWKLLSEVLGEKVNKTSF 80  
WD40-rpts                                                                                      

Query       81 RTAIERATAQSNQYIEEKTRVKFTDNLLVAEAQTSYQDWGDAIDVDFFYGRQAELAQLQQWILVDQCRLVAVSGMGGIGK 160 
WD40-rpts                                                                                      

Query      161 TSLSIKLAQQLQSDFKWVIWRSLRNAPPVQEILTELLKLLSNQQEIDYPETVEGKISRLLHYLRSQRCLVIFDNIETILQ 240 
WD40-rpts                                                                                      

Query      241 HNEKSKSSYIKGYEYYGEIFRQIGEIRHQSCLVLTSRDQPPEVGLLEGASLPVRAFQLGGLKKTEAQELLHLKGNFQGST 320 
WD40-rpts                                                                                      

Query      321 EEWNRLVEGYAGNPLALKIIATTIQNLFDGSISDFLNQQAFVFGNIRNLIGQQFERLSESEKTVIYWLAIYRDPASFSEL 400 
WD40-rpts                                                                                      

Query      401 RSDIFPRRSPQELIDILESLEQRSLIEKTKPTLIEKHQTQFSLQPVVMEYATEKLVAQVCQEILAGLEANADQKILLFKT 480 
WD40-rpts                                                                                      

Query      481 HALLKAQAKDYVRETQVRFILKPILERLLLDRLLIEVSEQLAIENLLTQCLTKLRGTSSLKTGYAGGNILNLLCQLQSTL 560 
WD40-rpts                                                                                      

Query      561 TNYNFSNLTIWQAYLQDVNLHNVNFESSDLSQCVFAETFGMVFAGIAFSPDGTLLATGDAEGELRLWEVATGKLVVNFAG 640 
WD40-rpts                              (___________________WD 1___________________)   (________

Query      641 HLGWVWSLAFSPDGQLLASCSSDKTIRLWDVNTGKCLRTLSGHTSSIWSVAFSADGQMLASGGDEPTIRLWNVNTGDCHK 720 
WD40-rpts      _________WD 2________________)   (_________________WD 3________________)   (____

Query      721 IFSGHTDRILSLSFSSDGQTLASGSADFTIRLWKISGECDRILEGHSDRIWSISFSPDGQTLVSGSADFTIRLWEVSTGN 800 
WD40-rpts      _____________WD 4________________)  (_________________WD 5________________)   (_

Query      801 CFNILQEHSDRVRSLAFSPNAQMLVSASDDKTVRIWEASTGECLNILPGHTNSIFSVAFNVDGRTIASGSTDQTVKLWDV 880 
WD40-rpts      ________________WD 6________________)   (_________________WD 7________________) 

Query      881 NTGRCFKTLKGYSNSVFSVAFNLDGQTLASGSTDQTVRLWDVNTGTCLKKFAGHSGWVTSVAFHPDGDLLASSSADRTIR 960 
WD40-rpts        (_________________WD 8________________)   (_________________WD 9______________

Query      961 LWSVSTGQCLQILKDHVNWVQSVAFSPDRQILASGSDDQTIRLWSVSTGKCLNILQGHSSWIWCVTFSPNGEIVASSSED 1040
WD40-rpts      __)   (_________________WD10________________)   (_________________WD11__________

Query     1041 QTIRLWSRSTGECLQILEGHTSRVQAIAFSPDGQILSSAEDETVRLWSVDTGECLNIFQGHSNSVWSVAFSPEGDILASS 1120
WD40-rpts      ______)   (________________WD12________________)   (_________________WD13_______

Query     1121 SLDQTVRIWDRHTGVCLKVLPVLPHAMRSAIAFGKSTEHYAIASGSQNGTIQIWDAQTGECLKILNPDRPYQGSNITGVT 1200
WD40-rpts      _________)   (__________________WD14__________________)   (_________________WD15

Query     1201 GITTAQKDVLKALGAFEI 1218
WD40-rpts      ________________) 

15 WD40-repeats found in QUERY=gi_186680883_ref_YP_001864079.1_ (Len=1218):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   585-628      6.81  395.78  0.00029       22.5%     52.47
  WD 2:  Seg 12   632-670      9.88  522.93  5.6e-06       45.0%     57.00
  WD 3:  Seg 16   674-712     11.03  570.31  1.3e-06       57.5%     58.94
  WD 4:  Seg 20   716-754     10.42  545.06  2.8e-06       50.0%     53.92
  WD 5:  Seg 24   757-795     10.92  565.70  1.5e-06       57.5%     56.29
  WD 6:  Seg 28   799-837     10.20  535.82  3.7e-06       40.0%     55.84
  WD 7:  Seg 32   841-879     10.86  563.10  1.6e-06       52.5%     56.56
  WD 8:  Seg 36   883-921     10.24  537.57  3.5e-06       47.5%     55.58
  WD 9:  Seg 40   925-963     10.35  542.17  3.1e-06       50.0%     57.39
  WD10:  Seg 44   967-1005    10.28  539.25  3.4e-06       50.0%     57.54
  WD11:  Seg 48  1009-1047    10.48  547.43  2.6e-06       47.5%     55.64
  WD12:  Seg 52  1051-1088     8.99  485.89  1.8e-05       50.0%     53.18
  WD13:  Seg 56  1092-1130    10.55  550.50  2.4e-06       50.0%     57.35
  WD14:  Seg 60  1134-1175     7.91  441.45  7.0e-05       35.0%     54.38
  WD15:  Seg 64  1179-1217     5.32  334.29  0.00194       17.5%     40.29

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  585-628    FESSDLSQCVFAETFGMVFAGI---AFSPDGTLLATGDAEGELRLWE
   WD 2  632-670    -GKL----VVNFAGHLGWVWSL---AFSPDGQLLASCSSDKTIRLWD
   WD 3  674-712    -GKC----LRTLSGHTSSIWSV---AFSADGQMLASGGDEPTIRLWN
   WD 4  716-754    -GDC----HKIFSGHTDRILSL---SFSSDGQTLASGSADFTIRLWK
   WD 5  757-795    -GEC----DRILEGHSDRIWSI---SFSPDGQTLVSGSADFTIRLWE
   WD 6  799-837    -GNC----FNILQEHSDRVRSL---AFSPNAQMLVSASDDKTVRIWE
   WD 7  841-879    -GEC----LNILPGHTNSIFSV---AFNVDGRTIASGSTDQTVKLWD
   WD 8  883-921    -GRC----FKTLKGYSNSVFSV---AFNLDGQTLASGSTDQTVRLWD
   WD 9  925-963    -GTC----LKKFAGHSGWVTSV---AFHPDGDLLASSSADRTIRLWS
   WD10  967-1005   -GQC----LQILKDHVNWVQSV---AFSPDRQILASGSDDQTIRLWS
   WD11 1009-1047   -GKC----LNILQGHSSWIWCV---TFSPNGEIVASSSEDQTIRLWS
   WD12 1051-1088   -GEC----LQILEGHTSRVQAI---AFSPDGQILSSAE-DETVRLWS
   WD13 1092-1130   -GEC----LNIFQGHSNSVWSV---AFSPEGDILASSSLDQTVRIWD
   WD14 1134-1175   -GVC----LKVLPVLPHAMRSAIAFGKSTEHYAIASGSQNGTIQIWD
   WD15 1179-1217   -GEC----LKILNPDRPYQGSN---ITGVTGITTAQKDVLKALGAFE

   WD40 Template    TGEC----LRTLSGHTSGVTSV---SFSPDGKRLVSGSEDGTIKVWD