Input parameters:
Query = gi_186680947_ref_YP_001864143.1_ (Len=542)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186680947_ref_YP_001864143.1_, Len=542):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVMFSLNQIPMLRRILSASLLSLIPSVASLITLEVFSPTALGQPPAASVETKLTVPSSMNYAPFNINRYLKVPPNFSIAV 80
WD40-rpts
Query 81 YARINKARFMAVAPNGDLLVSQPSANKVLIVRANGSKDPIISDFVTGLRKPHDIVFHKINNTTYVYISETHQINRFIYNS 160
WD40-rpts
Query 161 GDLTAKNRQIVVTGLPDSSTGELKGAYGHELKNIALDANHKLYVSIASTCNACKEDTISNPVRGAVYQYNADGSNRRLFA 240
WD40-rpts
Query 241 QGLRNAEGLAFLPNTNDLWVVVNNRDNIAYPFNDGSGNYGKIIPSYVDDHPPEEFTRVQDGGNYGWPFCNPNPDTSNGVN 320
WD40-rpts
Query 321 NMPFDRDYEFNANGKVNCNAMDRISKGIQAHSAPLGLTFLQNTNFPSLYSNGAVAGLHGSWNRQKKTGYKIAYFPWNNST 400
WD40-rpts
Query 401 KAPEQEMDLVNGWLVPGTQEIWGRPVDMVVDQQGNLLISDDYSGTIYKLSYTPSAKVVKAYRDANFAGSSQSFPTTPGVY 480
WD40-rpts (_________________WD 1_________________)
Query 481 KANQGDLKVVGNDAISSLSVPSGTVVRVCQHETGGRCREFSPGDYKSVGADFDNIISFIEVK 542
WD40-rpts
1 WD40-repeats found in QUERY=gi_186680947_ref_YP_001864143.1_ (Len=542):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 22 411-450 3.41 255.65 0.02212 17.5% 31.22
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 411-450 NGWLVPGTQEIWGRPVDMVVDQQGNLLISDDYSGTIYKLS
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD