Input parameters:

  Query = gi_186681051_ref_YP_001864247.1_ (Len=587)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186681051_ref_YP_001864247.1_, Len=587):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDWISLLKAQQTDFLQRVKKPKTYDLSLLESQVKGCHTEMMAFWGEPLARLQELSRQQAEVLAKNPPPTPPEYPEPPDWT 80  
WD40-rpts                                                                                      

Query       81 IPFPKYFQRQAEDYLLREKIVDLVIAERLGKLVKKVSQDTLQNMILDDEGNLCGESKFSYVLKDNPQLSIQVYVADGESF 160 
WD40-rpts                                                  (___________________WD 1____________

Query      161 NGIKKDKIKWSVTQEDLKNHQVLIFLCLFYPSTGQLGYERQSVITGFLPANQIELTEPKLYISPSNLLYAGGLSWYLESL 240 
WD40-rpts      ______)     (_______________WD 2______________)                          (______

Query      241 IAKKDTSPVINEKAIADTIQTLPSEHCLKGIVGDWECWQTLQGHNRGINCLAFSFACKNGKALPILASGSRGETKLWDLS 320 
WD40-rpts      ___________WD 3________________)  (___________________WD 4___________________)  

Query      321 KGELIDTLSEYPWVIPGLVDEVNSLAFSADGQTLVSCGADSTIKLWHVGALDLIDILHKHNGVVRCAAFTPDGRMLATGG 400 
WD40-rpts             (_________________WD 5_________________)   (_________________WD 6________

Query      401 DDRKILFWDLMHRQVAIAVSLDDTAAHSLVLSRDGETLVTGSYRKIKVWRTLPQTGIKSLKDAQPLHTLMGHSHIVRSLA 480 
WD40-rpts      ________)   (________________WD 7________________)            (_________________

Query      481 ISADAKLLVSGSWDQTIKIWQLETGELLHTLKGHRDRVYAIALSPDGQIIASGSADKTIKLWHLQTGELLGTFTGHGNIV 560 
WD40-rpts      WD 8________________)   (_________________WD 9________________)   (_____________

Query      561 TALAFTASGEMLVSGSLDKTIKIWQRS 587 
WD40-rpts      ____WD10________________)  

10 WD40-repeats found in QUERY=gi_186681051_ref_YP_001864247.1_ (Len=587):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   125-167      7.02  404.48  0.00022       15.0%     32.56
  WD 2:  Seg  6   173-207      5.38  336.76  0.00180       22.5%     36.70
  WD 3:  Seg  9   234-272      6.87  398.30  0.00027        7.5%     40.99
  WD 4:  Seg 13   275-318      6.44  380.67  0.00046       35.0%     49.97
  WD 5:  Seg 18   328-367     10.39  543.96  2.9e-06       40.0%     44.18
  WD 6:  Seg 21   371-409      9.73  516.76  6.7e-06       32.5%     53.97
  WD 7:  Seg 25   413-450      7.80  436.82  8.1e-05       32.5%     50.54
  WD 8:  Seg 29   463-501      9.94  525.22  5.2e-06       50.0%     52.16
  WD 9:  Seg 33   505-543     10.72  557.30  1.9e-06       50.0%     57.00
  WD10:  Seg 37   547-585     10.51  548.85  2.5e-06       50.0%     53.24

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  125-167    ILDDEGNLCGESKFSYVLKDNPQLSIQVY-----VADGESFNGIKKDK
   WD 2  173-207    TQE---DLKNHQVLIFLCLFYPSTG---Q-----L--GYERQSVITGF
   WD 3  234-272    -SWYLESLIAKKDTSPVINEKAIAD---T-----IQTLPSEHCLKGIV
   WD 4  275-318    -WECWQTLQGHNRGINCLAFSFACK---NGKALPILASGSRGETKLWD
   WD 5  328-367    LSEYPWVIPGLVDEVNSLAFSADGQ---T-----LVSCGADSTIKLWH
   WD 6  371-409    -LDLIDILHKHNGVVRCAAFTPDGR---M-----LATGGDDRKILFWD
   WD 7  413-450    -RQVAIAVSLDDTAAHSLVLSRDGE---T-----LVTGSYR-KIKVWR
   WD 8  463-501    -AQPLHTLMGHSHIVRSLAISADAK---L-----LVSGSWDQTIKIWQ
   WD 9  505-543    -GELLHTLKGHRDRVYAIALSPDGQ---I-----IASGSADKTIKLWH
   WD10  547-585    -GELLGTFTGHGNIVTALAFTASGE---M-----LVSGSLDKTIKIWQ

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGK---R-----LVSGSEDGTIKVWD