Input parameters:

  Query = gi_186681055_ref_YP_001864251.1_ (Len=782)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186681055_ref_YP_001864251.1_, Len=782):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQQGLMLLIQLVLEFAPVVAELVQNRNKSSLGLSKYEPIEAIPEILKVFNLSNKKSGYVEDFEKERIFQQQLVADNHQTR 80  
WD40-rpts                                                                                      

Query       81 LKIAAQERETALKLPEVNKIIDSWPLRLYPSQILDHTNYGHTPLKIFIAPPQVDFDQFGDRRDENISQIELMLAEGLRDF 160 
WD40-rpts                                                                                      

Query      161 LNKHYSLHSQVRPTELLAGAWDSKRFHSESSIKVLFGMLKTEPSLILESENDGDYLNFRIAYWGLEQDNYYYKTIARLPY 240 
WD40-rpts                                                                                      

Query      241 REILEESAKRRALEWKKIRDELVALGEKLEEVNQLGKDNLINLEILEKVEKWHEKGIDISKLSLQYQVNRQDYEKLCQVL 320 
WD40-rpts                                                                                      

Query      321 ITYHCLVAGWVADIYHLVDRGVPPLLPELLPSLLSDTFDLQSVGVIASGYKQVYQALENERCYWIPELALQLAQSLCHLS 400 
WD40-rpts                                          (_________________________WD 1______________

Query      401 DAYDGKLRSWAKEQLNYSVSTWLQLRQVSPHDSPNLLQAMQSAVSVKDEEYVKKLREYFVAVGDTQSIADVDEILNRIAN 480 
WD40-rpts      __________)(__________________WD 2__________________)                           

Query      481 LKHQVTVQHIFLSHTLTGHSEKVTSVAISPDSETLVSGSADKTIKVWNLKTGKLIRTLTEDLGKISSVAISPDGHYFAVG 560 
WD40-rpts               (_________________WD 3________________)   (__________________WD 4______

Query      561 ICQHPRSNVKVWNLNSDKLLHTLLGHQKPVNCIAISPDGQFLASGSNKIKIWNLHKGDRISTLWHSFTVNAAAISPDGTI 640 
WD40-rpts      ____________)   (________________WD 5_______________)   (________________WD 6___

Query      641 LASGSSDNKIRLWNPHTGDPLRTLNGHSGEIKSVIISPDGEILFSASADKTIKIWHLTTGKVLHTLTGHLEEVRSLAVSP 720 
WD40-rpts      _____________)   (_________________WD 7________________)   (_________________WD 

Query      721 DGEILFSGSTDKTIKIWHLQTGELLQTITEHSGTVNSIAISHDGQFLASASSDKTIKIWQIN 782 
WD40-rpts      8________________)   (_________________WD 9________________)  

9 WD40-repeats found in QUERY=gi_186681055_ref_YP_001864251.1_ (Len=782):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   357-411      3.43  256.21  0.02174       17.5%     35.77
  WD 2:  Seg  9   412-453      5.73  351.27  0.00115       10.0%     38.96
  WD 3:  Seg 14   490-528     10.63  553.71  2.1e-06       55.0%     52.79
  WD 4:  Seg 18   532-573      8.60  469.76  2.9e-05       35.0%     53.31
  WD 5:  Seg 22   577-613      8.07  447.90  5.7e-05       42.5%     51.47
  WD 6:  Seg 26   617-654      8.97  485.18  1.8e-05       40.0%     51.40
  WD 7:  Seg 30   658-696     10.92  565.70  1.5e-06       52.5%     53.81
  WD 8:  Seg 34   700-738     10.78  559.95  1.8e-06       52.5%     57.13
  WD 9:  Seg 38   742-780     10.42  545.21  2.8e-06       45.0%     53.18

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  357-411    TFDLQSVGVIASGYKQVYQALENERCYWIPELALQLAQSLCHLSD---AYDGKLRSWA-----
   WD 2  412-453    --KEQLNYSVSTW---------------LQLRQVSPHDSP-NLLQ---AMQSAVSVKDEEYVK
   WD 3  490-528    IFLSHTLTGHSEK---------------VTSVAISPDSET-LVSG---SADKTIKVWN-----
   WD 4  532-573    GKLIRTLTEDLGK---------------ISSVAISPDGHY-FAVGICQHPRSNVKVWN-----
   WD 5  577-613    DKLLHTLLGHQKP---------------VNCIAISPDGQF-LASG---S--NKIKIWN-----
   WD 6  617-654    GDRISTL-WHSFT---------------VNAAAISPDGTI-LASG---SSDNKIRLWN-----
   WD 7  658-696    GDPLRTLNGHSGE---------------IKSVIISPDGEI-LFSA---SADKTIKIWH-----
   WD 8  700-738    GKVLHTLTGHLEE---------------VRSLAVSPDGEI-LFSG---STDKTIKIWH-----
   WD 9  742-780    GELLQTITEHSGT---------------VNSIAISHDGQF-LASA---SSDKTIKIWQ-----

   WD40 Template    GECLRTLSGHTSG---------------VTSVSFSPDGKR-LVSG---SEDGTIKVWD-----