Input parameters:
Query = gi_186681116_ref_YP_001864312.1_ (Len=168)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186681116_ref_YP_001864312.1_, Len=168):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MADKKNDFLSISPSFFSQLLFGAFLTFILIMTGSAPALSIFLGIMGGFILSWITNVTDNSPQAPNVASSDGVDTGLKYWL 80
WD40-rpts (______________________________________________________WD 1_____________________
Query 81 FFMLGFVYLGYPAPTSILLGGIGALAGGWITAWWGSKEETRTQLQVEELEEGEVEPTNDRINKRQTRRNTRRYRRAPGSS 160
WD40-rpts _________________________________)
Query 161 INFKFWER 168
WD40-rpts
1 WD40-repeats found in QUERY=gi_186681116_ref_YP_001864312.1_ (Len=168):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-114 3.02 239.49 0.03627 20.0% -0.14
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-114 MADKKNDFLSISPSFFSQLLFGAFLTFILIMTGSAPALSIFLGIMGGFILSWITNVTDNSPQAPNVASSDGVDTGLKYWLFFMLGFVYLGYPAPTSILLGGIGALAGGWITAWW
WD40 Template TGECLRTLSGHT---------------------SGV------------------TSVSFSPDGKRLVSG-SED----------------------------------GTIKVWD