Input parameters:
Query = gi_186681218_ref_YP_001864414.1_ (Len=713)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186681218_ref_YP_001864414.1_, Len=713):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPITTDSPSPRIPSGTRDSRKHTPKTDMRGLYQRAIRESFVKLDPRITVKNPVMFVVWVGTIVTFLVTLNPNLFGTIQAD 80
WD40-rpts
Query 81 ISQQRLLNGLITFILFFTLVFANFAEAVAEGRGKAQADSLRSTRSDTIANKILPDGSVQQVNSTELRRGDLVKVVANNMI 160
WD40-rpts
Query 161 PADGDVIKGIGSVDESAITGESAPVLKQPGTDIASSVTGGTRLLSDELTIRISADPGQGFIDRMIYLVEGAQRTKTPNEI 240
WD40-rpts
Query 241 ALTVLLAVLTQVFLIVVATMPPFVGYIANFITTAFGPEAGNSLRTGGSVAILISLLVALIPTTIGGLLSAIGIAGMDRVA 320
WD40-rpts
Query 321 QFNVIATSGRAVEACGDINTLVLDKTGTITLGNRMADELIPLDNHSLEDVARVSLAASLFDETPEGKSIVVLAEKSQAAV 400
WD40-rpts
Query 401 DFNIDKAEGVEFSAKTRMSGTNLPDGKQVRKGAVDAIKGFVRSRGGYVPDDIDAAYERVSRLGGTPLAVCQDDKIYGVIY 480
WD40-rpts
Query 481 LKDIVKPGLRERFDQLRRMGVRTVMLTGDNRITASVIAEEAGVDDFIAEATPEDKIEVIRSEQSQGKLVAMTGDGTNDAP 560
WD40-rpts (_________________________________________WD 1________________
Query 561 ALAQANVGVAMNSGTQAAKEAANMVDLDSDPTKLIDLVTIGKQLLITRGALTTFSIANDIAKYFAIIPTIFAAAGIGALN 640
WD40-rpts _________________________)
Query 641 IMGLKSAQSAIVSALIYNALIIPALIPLALKGVKFLPLTADQLLRRNIFIYGLGGIVAPFIAIKLIDIILPLS 713
WD40-rpts
1 WD40-repeats found in QUERY=gi_186681218_ref_YP_001864414.1_ (Len=713):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 14 499-586 3.35 252.90 0.02407 22.5% 41.32
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 499-586 MGVRTVMLTGDNRITASVIAEEAGVDDFIAEATPEDKIEVIRSEQSQGKLVAMTGDGTNDAPALAQANVGVAMNSGTQAAKEAANMVD
WD40 Template TGECLRTLSGHT-----------SGVTSVSFSPD------------GKRLVSGSEDGTIK-------------------------VWD