Input parameters:

  Query = gi_186681332_ref_YP_001864528.1_ (Len=294)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186681332_ref_YP_001864528.1_, Len=294):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGDFGNVLTAMITPFKADGSVDYGVAAELAVHLANNGTDTLVMCGTTGESPTLSWDEEYQLFVEVLQSVAGKAKVIAGCG 80  
WD40-rpts                                         (_________________________________WD 1_______

Query       81 SNSTKEAIAATQKASKIGVHGSLQVVPYYNKPPQAGLEAHFQAIAQACPDLPLLLYNVPGRTGQNLQPETVARLAEVSNI 160 
WD40-rpts      __________________________)                                                     

Query      161 VGIKESTGSIDQASEIRRLTPKEFHIYSGDDYMTLPLLAIGAKGVVSVASHLVGNQLQQMIQAFSAGKIEVARDIHLQLF 240 
WD40-rpts                                                                                      

Query      241 PLFKALFLTSNPIPVKKALKLQGWEVGSTRPPLCEADLEVSQKLEGVLKELSLI 294 
WD40-rpts                                                            

1 WD40-repeats found in QUERY=gi_186681332_ref_YP_001864528.1_ (Len=294):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    36-107      3.35  252.92  0.02405       20.0%     -5.41

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   36-107    NGTDTLVMCGTTGESPTLSWDEEYQLFVEVLQSVAGKAKVIAGCGSNSTKEAIAATQKASKIGVHGSLQVVP

   WD40 Template    TGECLRTLSGHTSGVTSVS---------------FSPDGKRLVSGSE-----------------DGTIKVWD