Input parameters:

  Query = gi_186681444_ref_YP_001864640.1_ (Len=1211)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186681444_ref_YP_001864640.1_, Len=1211):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEENSNYSSRFENEVKSAVVGEKNIIYNYFYYREEARVEPVDSTDAADEYLPCPYRGLFHFGPNDADVFCGREIFIEEL 80  
WD40-rpts                                                                                      

Query       81 YSATKTNNFIPVLGASGSGKSSVVLAGLVPKLQTAGHWQFTHFRPGSDPFHALALALVPLYTPNLDQTDQIAQARKMAGY 160 
WD40-rpts                                                                                      

Query      161 LQDGSVILLDVFAKIQQNHPNHRVLLIADQFEEIYTLCNNQEIRRKFLDCLLASLVTPTSLTSSATVLVTTMRADFLGNA 240 
WD40-rpts                                                                                      

Query      241 LSYRPFADVLQNADVKLGPMNREELTEVIGKPAQKFGVTFADGLVERILDDVENQPGNLPLLEFALTELWNKRTGKQLTH 320 
WD40-rpts                                                                                      

Query      321 KIYEEIGQVEGALARHADEKYGNLTDDEKEKVRRIFIQLVRPGEGAEDTRRIAMKAQLGEQSWSLVKKLADARLVVTSRN 400 
WD40-rpts                                                                                      

Query      401 LSSQETVEVVHEALIRNWGELRQWMNTNRVFRAWQERLRAAKGQWEATNKDSGSLLRGAALAEAEEKLKERPEDLIDEQE 480 
WD40-rpts                                                                                      

Query      481 FIEQSIKEGNRLKQVEAARRKREIRTAWAIAAGSVVAVVISSGLGLTAWNQTKQAQLNQAESLSRYSLSLINEHKDLEAF 560 
WD40-rpts                                                                                      

Query      561 VTAIKAGKILQSQHTTKLETFNALQTVLVQGRERNRLEGHQSAVNSVSFSPDGKTIATASQDKTARLWNLQGQLLQEFKG 640 
WD40-rpts                                    (_________________WD 1________________)  (________

Query      641 YQGTVLSVSFSPDGKTIATASSDKTARLWNLQGKLLQEFRGHRSGRGMSFSPDGKTIATASEDGTTRLWNLQGQLLQEFK 720 
WD40-rpts      _________WD 2________________)  (________________WD 3________________)  (_______

Query      721 GHQGSDEGVSFSPDGKTIATASQDKTARLWNLQGQLLQEFKGHQGEVSSVSFSPDGKTIATASSDKTARLWNLQGQLLQE 800 
WD40-rpts      __________WD 4________________)  (_________________WD 5________________)  (_____

Query      801 FKGHQRGVNSVSFSLDGKTIATASSDKTARLWNLQGQLLQEFKGHQGLVLSVSFSPDGKTIATSSDDKTARLWNLQRQLL 880 
WD40-rpts      ____________WD 6________________)  (_________________WD 7________________)  (___

Query      881 QEFKGHQGEVSSVSFSPDGKTIATASEDGTAQLWNLQGQLLQEFKGHRSGRGVSFSPDGKTIATASADRTAQLWNLQGQL 960 
WD40-rpts      ______________WD 8________________)  (________________WD 9________________)  (__

Query      961 LQEFKGHQNVVSSVSFSPDGKTIATASWDCTARLWNLQGQLLQEFKGHQGAVNSVSFSPDGKTIATASVDETARLWNLQG 1040
WD40-rpts      _______________WD10________________)  (_________________WD11________________)  (

Query     1041 QLLQEFKGHQSGVNSAKFSAVNSVSFSPDGKTIATASSDNTAQLWNLQGQLLQEFKGHQGLVLSVSFSPDGKTIATASSD 1120
WD40-rpts      _____________________WD12____________________)  (_________________WD13__________

Query     1121 NTARLWNLQGQLLQEFKGHQRGVNSVSFSPDGKTIATASYDKTIKLWDLDLHPLMRRSCDSVRDYLTYNPLKDNPDVSEN 1200
WD40-rpts      ______)  (_________________WD14________________)                                

Query     1201 DRHLCDGIGRK 1211
WD40-rpts                 

14 WD40-repeats found in QUERY=gi_186681444_ref_YP_001864640.1_ (Len=1211):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   591-629      9.58  510.46  8.2e-06       47.5%     56.79
  WD 2:  Seg 14   632-670      9.92  524.42  5.3e-06       42.5%     56.55
  WD 3:  Seg 18   673-710      8.72  475.03  2.5e-05       45.0%     55.98
  WD 4:  Seg 22   713-751     10.00  527.76  4.8e-06       40.0%     56.99
  WD 5:  Seg 26   754-792     10.10  531.79  4.2e-06       45.0%     56.72
  WD 6:  Seg 30   795-833     10.07  530.51  4.4e-06       45.0%     55.16
  WD 7:  Seg 34   836-874     10.13  532.91  4.1e-06       45.0%     56.73
  WD 8:  Seg 38   877-915      9.62  512.10  7.8e-06       47.5%     48.64
  WD 9:  Seg 41   918-955      8.23  454.82  4.6e-05       42.5%     56.32
  WD10:  Seg 45   958-996      9.82  520.39  6.0e-06       45.0%     56.64
  WD11:  Seg 49   999-1037    10.02  528.73  4.6e-06       45.0%     55.13
  WD12:  Seg 53  1040-1086     8.65  472.00  2.7e-05       50.0%     54.61
  WD13:  Seg 57  1089-1127    10.17  534.97  3.8e-06       45.0%     56.68
  WD14:  Seg 61  1130-1168    10.33  541.28  3.1e-06       55.0%     56.12

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  591-629    GRERNRLEGHQSA--------VNSVSFSPDGKTIATASQDKTARLWN
   WD 2  632-670    GQLLQEFKGYQGT--------VLSVSFSPDGKTIATASSDKTARLWN
   WD 3  673-710    GKLLQEFRGHRS---------GRGMSFSPDGKTIATASEDGTTRLWN
   WD 4  713-751    GQLLQEFKGHQGS--------DEGVSFSPDGKTIATASQDKTARLWN
   WD 5  754-792    GQLLQEFKGHQGE--------VSSVSFSPDGKTIATASSDKTARLWN
   WD 6  795-833    GQLLQEFKGHQRG--------VNSVSFSLDGKTIATASSDKTARLWN
   WD 7  836-874    GQLLQEFKGHQGL--------VLSVSFSPDGKTIATSSDDKTARLWN
   WD 8  877-915    RQLLQEFKGHQGE--------VSSVSFSPDGKTIATASEDGTAQLWN
   WD 9  918-955    GQLLQEFKGHRS---------GRGVSFSPDGKTIATASADRTAQLWN
   WD10  958-996    GQLLQEFKGHQNV--------VSSVSFSPDGKTIATASWDCTARLWN
   WD11  999-1037   GQLLQEFKGHQGA--------VNSVSFSPDGKTIATASVDETARLWN
   WD12 1040-1086   GQLLQEFKGHQSGVNSAKFSAVNSVSFSPDGKTIATASSDNTAQLWN
   WD13 1089-1127   GQLLQEFKGHQGL--------VLSVSFSPDGKTIATASSDNTARLWN
   WD14 1130-1168   GQLLQEFKGHQRG--------VNSVSFSPDGKTIATASYDKTIKLWD

   WD40 Template    GECLRTLSGHTSG--------VTSVSFSPDGKRLVSGSEDGTIKVWD