Input parameters:
Query = gi_186681473_ref_YP_001864669.1_ (Len=309)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186681473_ref_YP_001864669.1_, Len=309):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTNSKSVAILGAGAWGASLANLAAANGHQVRVWSRQGSQTLQTVLEDAQIILSAISMIGVRDVASQIQSFSLSPETIFVT 80
WD40-rpts
Query 81 ATKGLDPQTTCTPSQIWQTVFANHAVVVLSGPNLSKEIQLELPAATVVASNIPTAAEVVQLVFSSHRFRVYTNPDPLGVE 160
WD40-rpts (_________________________________________________WD 1_____
Query 161 LGGTLKNVIAIAAGVCDGLHLGTNAKAALVTRGLTEMVRIGNDWGAKTETFYGLSGLGDLLATCNSPLSRNYQVGYQLAG 240
WD40-rpts ____________________________________________)
Query 241 GKTLKETLANLQGTAEGVNTCQVLMQRAKQQNIPVPITEQVYRLLQGEVTPRQALDELMLRDIKPEYNY 309
WD40-rpts
1 WD40-repeats found in QUERY=gi_186681473_ref_YP_001864669.1_ (Len=309):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 102-205 2.78 229.50 0.04912 17.5% 30.51
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 102-205 ANHAVVVLSGPNLSKEIQLELPAATVVASNIPTAAEVVQLVFSSHRFRVYTNPDPLGVELGGTLKNVIAIAAGVCDGLHLGTNAKAALVTRGLTEMVRIGNDWG
WD40 Template TGECLRTLSGHT--------SGVTSVSFSPD-------------GKRLVSGSEDGT---------------------IKVW----------------------D