Input parameters:

  Query = gi_186681611_ref_YP_001864807.1_ (Len=1007)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186681611_ref_YP_001864807.1_, Len=1007):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVTNKNQGYLLSLLLLSTLGANIQSASARTTSPVGNLQGGAALLPTGQIITPAAAPGSTFAPLATGLRTDDNADAAEAVS 80  
WD40-rpts                                                                    (_________________

Query       81 TALSPDGKTLLVLTSGYNQNFKNENTGSNFTYPVLDPQTGKSSGTTTRKAEWVFVYDVSSGKLVKRQQINIPNTYNGLAW 160 
WD40-rpts      _WD 1_________________)                                  (___________________WD 

Query      161 AKDGSRFFVSGGIDDRVYVYASNGSQYVPDAPFILLGHNSNQTDPFPKYDGGLLKDTPAKAVATGAVVAGIAVSKDGRTL 240 
WD40-rpts      2___________________)                                          (_____________WD 

Query      241 VTANFENDSISIVDATTRKVTKEIKFFRPGDKIATGEFPFDVAIKSAENGQAAKVFISSQRDNEVLAVAITSGQITRIPI 320 
WD40-rpts      3____________)            (___________________WD 4__________________)(__________

Query      321 GSQPNKVLLSPSQNRLYVANGNDDSISVIDTDSNRVVRTISLSRPGDRYKGANPNSLALSPDGATLYVTLGGENAVAVVD 400 
WD40-rpts      ________WD 5_________________)   (_____________________WD 6____________________)

Query      401 LQSSRVNGRIPTGWYPNSVSVSQDGQRLYVVNAKSNSGPNPAGNLTTPAGLARNTNFKNEYNWALEKAGISIIPVPKGAT 480 
WD40-rpts                                                                                      

Query      481 LGTLSAQVDKNNGFYNRRPDRTMRYLQGKIKHVIYIVKENRTYDQVLGDLPLGNGDPTLTLFPNNISPNHHKLSFGFATF 560 
WD40-rpts                         (___________________WD 7___________________)                 

Query      561 DNFYDSGESSGVGWSWSTFARTTDYTEKTQSVLYGNAGFNGLTYDYEGTNRNISLALPQTSSNASPINTRLTGILDRSGR 640 
WD40-rpts                           (______________WD 8_____________)   (_________________WD 9_

Query      641 SSILPGDRDVNAPEGDGDLGIDVIGGYLWDAALRAGKTVRNYGFLVDNGAPYITSQPDPTKPDPQNPAYIPISPNPYADK 720 
WD40-rpts      _______________)                                                                

Query      721 IPQAPVTKTVLLDKTDLYFRSFDMNNPDIYLYNEWARDIEQNGLPNLMLVRLPHDHFGSFGTALAGLNTPQLQMADNDYA 800 
WD40-rpts                                                                                      

Query      801 IGKLVEKISHLPEWKETAIFIIEDDSQNGPDHVDSHRSLAYVISPYTKRGALVSTNYNTINVLRTMEDLLNIGYLAITDA 880 
WD40-rpts                                                                                      

Query      881 NAEPMSDAFTREPNFEPYTAVVPGNLCANPVDPKLVPACQDQNVEKTAAMPILNDKSWWAAMTKDFNFVGEDNLDPEEFN 960 
WD40-rpts                                                                                      

Query      961 EILWAGIKGDSIPYPEERNRQDLRQNRAQVLKNWQLSERNNSTEAKK 1007
WD40-rpts                                                     

9 WD40-repeats found in QUERY=gi_186681611_ref_YP_001864807.1_ (Len=1007):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    63-103      4.24  289.81  0.00771       25.0%     39.64
  WD 2:  Seg  9   138-181      3.89  275.52  0.01199       22.5%     50.75
  WD 3:  Seg 15   224-254      2.88  233.45  0.04358       25.0%     38.73
  WD 4:  Seg 19   267-309      4.25  290.01  0.00766       12.5%     33.48
  WD 5:  Seg 22   310-350      4.93  318.36  0.00319       30.0%     47.53
  WD 6:  Seg 26   354-400      4.01  280.12  0.01041       32.5%     48.80
  WD 7:  Seg 38   500-543      3.16  245.17  0.03049       20.0%     20.74
  WD 8:  Seg 44   582-614      3.05  240.79  0.03485       17.5%     14.31
  WD 9:  Seg 45   618-656      4.83  314.01  0.00365       12.5%     -0.27

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   63-103    LAT---GLRTDDNADAAE-------AVST-----ALSPDG---KTL-LVLTSGYNQNFKN
   WD 2  138-181    VSSGKLVKRQ-QINIPNT-------YNGL-----AWAKDG---SRFFVSGGIDDRVYVYA
   WD 3  224-254    TG--------------AV-------VAGI-----AVSKDG---RTLVTANFENDSISIVD
   WD 4  267-309    FRP---GDKI-ATGEFPF-------DVAI-----KSAENGQAAKVF-ISSQRDNEVLAVA
   WD 5  310-350    ITS---GQIT-RIPIGSQ-------PNKV-----LLSPSQ---NRLYVANGNDDSISVID
   WD 6  354-400    -NR---VVRT-ISLSRPGDRYKGANPNSL-----ALSPDG---ATLYVTLGGENAVAVVD
   WD 7  500-543    -DR---TMRY-LQGKIKH-------VIYIVKENRTYDQVL---GDL-PLGNGDPTLTLFP
   WD 8  582-614    T-----------TDYTEK-------TQSV-----LYGNAG---FNG-LTYDYEGTNRNIS
   WD 9  618-656    -PQ---TSSN-ASPINTR-------LTGI-----LDRSGR---SSI-LPGDRDVNAPEGD

   WD40 Template    TGE---CLRT-LSGHTSG-------VTSV-----SFSPDG---KRL-VSGSEDGTIKVWD