Input parameters:
Query = gi_186681617_ref_YP_001864813.1_ (Len=358)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186681617_ref_YP_001864813.1_, Len=358):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLDAIIIFSFILAASGIGFYSIELLPNGTLDQVTNLEALRLVVAVFAAIIGGAIGLSFQTTYRRLESQVKEMPLEMILTR 80
WD40-rpts
Query 81 AIGLVIGLLLANLMLAPLFLLPIPADFGFIKPLVAVVGSIILSVTGMNLADTHGRGLLRFINPNTVESMVVEGTLKPANT 160
WD40-rpts
Query 161 KVLDTSCIIDGRIEALLETGFLEGQILVPQFVLQELQQVADASKDQKRVRGRRGLEILNRIKEEYPDRILINTVDYEDIP 240
WD40-rpts
Query 241 TVDAKLVRFAQEISGTLLTNDYNLSKVASVQKVPVLNVNDLVNAVRPSYLPGDNLDLKILKEGKEPSQGIGYLDDGTMVV 320
WD40-rpts (_______________________WD 1______________________
Query 321 VEEGSSYVGGELRVVVTSALQTTAGRMIFAKPQASALA 358
WD40-rpts _)
1 WD40-repeats found in QUERY=gi_186681617_ref_YP_001864813.1_ (Len=358):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 271-322 3.37 254.01 0.02326 15.0% 28.68
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 271-322 QKVPVLNVNDLVNAVRPSYLPGDNLDLKILKEGKEPSQGIGYLDDGTMVVVE
WD40 Template TGECLRT------------LSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD