Input parameters:
Query = gi_186681648_ref_YP_001864844.1_ (Len=839)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186681648_ref_YP_001864844.1_, Len=839):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAIAIVIVSHSKQLALGVRELAAQMVRGQVSIAVAAGIEDPENPLGTDPIQVYEAIASVFSDDGVLVLMDLGSALLSAE 80
WD40-rpts (_________________________________WD 1________________________________)
Query 81 MAIEFLPEAQQQKVYLCEAPLVEGAVAAVVAAAAGKNIHQVMAEARGALLAKATQLGVSPLSVVSDNIEVRNSELPVKEI 160
WD40-rpts
Query 161 RLIVSNRLGLHARPAAQFVGTSARFQSQILVQNLTRNTGLVRGDSINQVTTLGVRQGHELVITATGSDADEALAALQALF 240
WD40-rpts
Query 241 ANNFGEDNVVLNSPPVFHHEVTPATHGELSGIAASAGVAIAPVVNYQPTHITITEYHVDNPESEWQRVQAAIHTAKQEIQ 320
WD40-rpts
Query 321 AVFSQASLQIGDTEAAIFDAQLLFLEDPVLLEAAHQRILDHYINAEAAWQAVVDEVATSYRTLEDAYLQERVEDVVDVGQ 400
WD40-rpts
Query 401 RVLRLLAGNAPANLHLSEPAILVATDLTPSDTARLDPRMVLGICTTSGSATSHSAIIARTLGIPAVLGVDSQVLHLADGT 480
WD40-rpts
Query 481 LMALDGESGKAWVEPESHILDLLEAKREAWQTAQEEARATAHQPAITLDGRQVSVFANIGSINDVQVAVASGAEGVGLLR 560
WD40-rpts
Query 561 TEFLYLDRTSAPTEEEQLEVYQAIAQVLDNRPLIIRTLDVGGDKPLPYLRVGFPEANPFLGWRGIRFCLDHLDLFKTQLR 640
WD40-rpts
Query 641 AILRASVGHQIKIMLPMIATVTEVRAAKVILGEVQAELNQAGIPFDAAMKVGIMVEVPSAVAIADQLAAEVDFFSIGTND 720
WD40-rpts
Query 721 LSQYVMASDRTNPRVANLVDALHPAVLRMVQQTIQAAHAAGISVGLCGELAADTLATPILLGLGLDELSVNPQSIPGVKQ 800
WD40-rpts
Query 801 AIARLSIVESEAIAASALQQDSAVHVREIISTSIIPPTN 839
WD40-rpts
1 WD40-repeats found in QUERY=gi_186681648_ref_YP_001864844.1_ (Len=839):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-71 2.78 229.54 0.04907 15.0% 23.18
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-71 MAAIAIVIVSHSKQLALGVRELAAQMVRGQVSIAVAAGIEDPENPLGTDPIQVYEAIASVFSDDGVLVLMD
WD40 Template TGECLRTLSGHT-----------------SGVTSVSFSPDGKRLVSGSE--------------DGTIKVWD