Input parameters:

  Query = gi_186681693_ref_YP_001864889.1_ (Len=1212)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186681693_ref_YP_001864889.1_, Len=1212):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKQGEIQQSVTESEYAATSATGNATITVTNYYYREEARLVASDSTDAADESLPCPYRGLFHFGPNDADIFFGREIFIEE 80  
WD40-rpts                                                                                      

Query       81 LYSATKTRNFIPVLGASGSGKSSVVLAGLVPKLQTAGNWQFTHFRPGADPFHALAVALVPLYTPNLDATDQIAQARKLAG 160 
WD40-rpts                                                                                      

Query      161 YLQDGSMLISDVFAKIRQNHPNQRVLLIADQFEEIYTLCHHQETRHKFLDCLLASLETSSSLSASATVWVTTMRADFLGN 240 
WD40-rpts                                                                                      

Query      241 ALSYRPFADILQNADVKLGPMNREELTQVIEKPAEKLGVTFASGLVERILEDVENQPGNLPLLEFALTELWNKRTGKQLT 320 
WD40-rpts                                                                                      

Query      321 HKIYEEIGQVEGALARHADEKYGNLTEEEKEKVRRIFIQLVRPGEGTEDTRRVAMKAELGEQSWDLVKQLADARLVVTSR 400 
WD40-rpts                                                                                      

Query      401 NATSQETVEVVHEALIRNWGELREWMNKDRVFRAWQERLRSAKGQWEATQRDEGALLRGAALVEGEEKLKQRREDISAGE 480 
WD40-rpts                                                                                      

Query      481 QEFIQASVALRDREQKQRERTKRLTFSGLAGGLVLALGLSGLAGIGWGNAEISQINAFAQSSDGFLSLDGRKAVESSVKA 560 
WD40-rpts                                                                                      

Query      561 AVKMRGKFWVDANTRTQVKLTLLNTVHNVAAPNTLGGHAKEVQGISFSPDGKMLASASDDNTVKLWDTTTGKEIKTLTGH 640 
WD40-rpts                                  (_________________WD 1________________)   (_________

Query      641 TNSVLGISFSPDGKMLASASSDNTVKLWDTTTGKEIKTLTGHTNSVLGISFSPDGKMLASASADNTVKLWDTTTGKEIKT 720 
WD40-rpts      ________WD 2________________)   (_________________WD 3________________)   (_____

Query      721 LTGHRNSVFGISFSPDGKMLASASADNTVKLWDTTTGKEIKTLTGHRNSVFGISFSPDGKMLASASFDNTVKLWDTTTGK 800 
WD40-rpts      ____________WD 4________________)   (_________________WD 5________________)   (_

Query      801 EIKTLTGHRNSVNDISFSPDGKMLASASDDNTVKLWDTTTGKEIKTLTGHRNSVNDISFSPNGKMLASASFDNTVKLWDT 880 
WD40-rpts      ________________WD 6________________)   (_________________WD 7________________) 

Query      881 TTGKEIKTLTGHTNSVNDISFSPDGKMLASASGDNTVKLWDTTTGKEIKTLTGHRNSVNDISFSPDGKMLASASGDNTVK 960 
WD40-rpts        (_________________WD 8________________)   (_________________WD 9______________

Query      961 LWDTTTGKEIKTLTGHTNSVNGISFSPDGKMLASASGDKTVKLWDTTTGKEIKTLTGHTNSVNGISFSPDGKMLASASGD 1040
WD40-rpts      __)   (_________________WD10________________)   (_________________WD11__________

Query     1041 KTVKLWDTTTGKEIKTLTGHTNSVNGISFSPDGKMLASASSDNTVKLWDTTTTGKKIKTLTGHTNSVNGISFSPDGKMLA 1120
WD40-rpts      ______)   (_________________WD12________________)    (_________________WD13_____

Query     1121 SASSDNTVKLWDTTTGKEIKTLTGHTNWVYGISFSPDGKMLASASTDNTVKLWRLDFDYLLQKGCSFMREYYKTNPPDNE 1200
WD40-rpts      ___________)   (_________________WD14________________)                          

Query     1201 SDKHLCDGVGNL 1212
WD40-rpts                  

14 WD40-repeats found in QUERY=gi_186681693_ref_YP_001864889.1_ (Len=1212):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   589-627      9.20  494.72  1.3e-05       50.0%     47.10
  WD 2:  Seg 13   631-669     11.01  569.36  1.3e-06       55.0%     57.25
  WD 3:  Seg 17   673-711     11.03  570.13  1.3e-06       55.0%     56.96
  WD 4:  Seg 21   715-753     10.92  565.76  1.5e-06       52.5%     56.32
  WD 5:  Seg 25   757-795     10.67  555.44  2.0e-06       52.5%     56.12
  WD 6:  Seg 29   799-837     10.92  565.93  1.5e-06       52.5%     56.41
  WD 7:  Seg 33   841-879     10.62  553.40  2.2e-06       50.0%     56.71
  WD 8:  Seg 37   883-921     10.67  555.34  2.0e-06       55.0%     55.63
  WD 9:  Seg 41   925-963     10.67  555.38  2.0e-06       52.5%     57.23
  WD10:  Seg 45   967-1005    10.80  560.98  1.7e-06       55.0%     57.31
  WD11:  Seg 49  1009-1047    10.80  560.75  1.7e-06       55.0%     56.70
  WD12:  Seg 53  1051-1089    11.04  570.89  1.3e-06       55.0%     56.94
  WD13:  Seg 57  1094-1132    10.86  563.25  1.6e-06       55.0%     57.72
  WD14:  Seg 61  1136-1174    10.46  546.91  2.6e-06       52.5%     55.48

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  589-627    VAAPNTLGGHAKEVQGISFSPDGKMLASASDDNTVKLWD
   WD 2  631-669    GKEIKTLTGHTNSVLGISFSPDGKMLASASSDNTVKLWD
   WD 3  673-711    GKEIKTLTGHTNSVLGISFSPDGKMLASASADNTVKLWD
   WD 4  715-753    GKEIKTLTGHRNSVFGISFSPDGKMLASASADNTVKLWD
   WD 5  757-795    GKEIKTLTGHRNSVFGISFSPDGKMLASASFDNTVKLWD
   WD 6  799-837    GKEIKTLTGHRNSVNDISFSPDGKMLASASDDNTVKLWD
   WD 7  841-879    GKEIKTLTGHRNSVNDISFSPNGKMLASASFDNTVKLWD
   WD 8  883-921    GKEIKTLTGHTNSVNDISFSPDGKMLASASGDNTVKLWD
   WD 9  925-963    GKEIKTLTGHRNSVNDISFSPDGKMLASASGDNTVKLWD
   WD10  967-1005   GKEIKTLTGHTNSVNGISFSPDGKMLASASGDKTVKLWD
   WD11 1009-1047   GKEIKTLTGHTNSVNGISFSPDGKMLASASGDKTVKLWD
   WD12 1051-1089   GKEIKTLTGHTNSVNGISFSPDGKMLASASSDNTVKLWD
   WD13 1094-1132   GKKIKTLTGHTNSVNGISFSPDGKMLASASSDNTVKLWD
   WD14 1136-1174   GKEIKTLTGHTNWVYGISFSPDGKMLASASTDNTVKLWR

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD