Input parameters:
Query = gi_186681724_ref_YP_001864920.1_ (Len=324)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186681724_ref_YP_001864920.1_, Len=324):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSQTNSVTITDVQAAQERILGIAHRTPVLTSRMVNDRTNSQVFFKCENFQRTGAFKFRGAYNALAQLSVAQKQTGVITYS 80
WD40-rpts (______
Query 81 SGNHAQAIALAGKLLNIPTTIVMPDDAPTVKQTATRGYGAEIILYNRQEANREELAQSLASDRSLTLIPPYDHPHVVAGQ 160
WD40-rpts _______________________________WD 1____________________________________)
Query 161 GTTALELIQEVGELDLLLVCCGGGGLLSGCAIAAKALLPNCKVIGVEPALADDATRSFHTKTLQTVKNPDTIADGARTPS 240
WD40-rpts
Query 241 LGKITFPLVLHYVDDMVTVSEEAILRTMFFLWERLKIVVEPTGVLAAAALLEGVVTAPESRIGVIISGGNVDLAQVGKLF 320
WD40-rpts
Query 321 SGGF 324
WD40-rpts
1 WD40-repeats found in QUERY=gi_186681724_ref_YP_001864920.1_ (Len=324):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 74-152 3.03 239.92 0.03579 15.0% 11.42
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 74-152 TGVITYSSGNHAQAIALAGKLLNIPTTIVMPDDAPTVKQTATRGYGAEIILYNRQEANREELAQSLASDRSLTLIPPYD
WD40 Template TGECLRTLS-------------GHTSGVTSVSFSP---------DGKRLVSGSED-----------------GTIKVWD