Input parameters:

  Query = gi_186681744_ref_YP_001864940.1_ (Len=624)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186681744_ref_YP_001864940.1_, Len=624):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQNYTGSNSPLITTEPYKEFPANRYVESSRQLDESENNGGTQPFLNDETPATLSVADAIAQMLVNLGVSYAFGVAGGAM 80  
WD40-rpts                                                                                      

Query       81 ASLWGALSNSSIEVLNFRHEAGAAFAATEAHFANNRPTVVFTTAGPGITNALTGLFAARGEGAKVILLSACTSAPQRGRW 160 
WD40-rpts              (_________________________________WD 1_________________________________)

Query      161 AIQETSTYTLPSGGIFTAGALFNYAITIESAAQLPQIFRKLAMALAQPGGFVAHLSIPTGVQTSLVEDVALPQLDVTPFP 240 
WD40-rpts                                                                                      

Query      241 MTASKEAIAKSVELLSSGPFAIWVGFGARDAAEEILELAEKTGAAVMCSPRGKGIFPEDHPQFVGVTGLGGHASVLTYME 320 
WD40-rpts                                                                                      

Query      321 QQPPLRTLVLGTRLGEPTSFWSSALVPKEGFIHVDIDPEVPGVAYPQVETFGVRSDIKAFVEELLEQLPDAPRSTTLSLP 400 
WD40-rpts                                                                                      

Query      401 NPERKAIEPAPEVDYPVRPEVLMAAIQKIIVEGSDAIVMAECGNSFTWSTHLLQFTETNRYRVSTGVGAMGHAVTGVLGA 480 
WD40-rpts                                                                                      

Query      481 ALASNTKAVGIVGDGAMLMNNEISTAVKYKIPAIWIVLNDARYNMCHQGMKILGLKGADATLPPTNFAMIARGMGAEALV 560 
WD40-rpts                                                                                      

Query      561 VVRESDIEAALEQAIASSVPFLIDVVIDADRPAPSGGRNKSLAAQGIKSSPAKNGAKQVSFPMV 624 
WD40-rpts                                                                      

1 WD40-repeats found in QUERY=gi_186681744_ref_YP_001864940.1_ (Len=624):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    89-160      2.91  234.84  0.04178       12.5%     20.83

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   89-160    NSSIEVLNFRHEAGAAFAATEAHFANNRPTVVFTTAGPGITNALTGLFAARGEGAKVILLSACTSAPQRGRW

   WD40 Template    TGECLRTLSGH----------------TSGVTSVSFSPD----------------GKRLVSGSEDGTIKVWD