Input parameters:

  Query = gi_186681772_ref_YP_001864968.1_ (Len=971)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186681772_ref_YP_001864968.1_, Len=971):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFEPWGVLVILIICPLLGGLPLIAWIAYALTGKQLSQVGTRNISVSAAFYHGGKFVGILAVLSEAFKGIAAVFLTRLFFP 80  
WD40-rpts                                    (______________________________________________WD 

Query       81 EGSFWELIALIALVIGRYWIGRGAGTTNVVWGFVVHDPLVAIFVSFFAGISFTILQSKQAVKYGVLLLFPLFVAILHLSD 160 
WD40-rpts      1______________________________________________)                                

Query      161 IPRMLAAVALAGLMAWIYAKIPDDMNLPAQEAQTESQAMLEFLRGDVYNGLRQRAMVSLDEELDAAIVGEKAATLSQIKR 240 
WD40-rpts                                                                                      

Query      241 WGYPVPKGWVLAPIDDPKVLTEFLQPSELSPLVVRSSAIGEDSEHSSAAGQYETVLNVTSPEALQQAIAQVQASYNHPSA 320 
WD40-rpts                                                                                      

Query      321 VQYRRDRGLNDTAMAVLIQQQVQSVYSGVAFSRDPITQQGDAIIIEALPGSPTQIVSGKVTPEQYRAFVVETEKSSSVQL 400 
WD40-rpts                                                                                      

Query      401 EGEGRVPQALIKQVAYLAYRLEKRYHGTPQDIEWSYDGQTLWVLQSRPITTLLPIWTRKIAAEVIPGVIHPLTWSINRPL 480 
WD40-rpts                                                                                      

Query      481 TCGVWGEFFTIVLGDRALGLDFNETATLHYSRAYFNASLLGNIFLRMGLPPESLEFLTRGAKLSKPSLQSTWENLPGLGK 560 
WD40-rpts                                                                                      

Query      561 LLKRELNLEKDFKQDYHQRFIPGLSQLAQENVDNLEPAKLLIRIDFILELLRHGTYYSILAPLSAALRQAIFRVKDGQID 640 
WD40-rpts                                                                                      

Query      641 NSVTPEVAALRSLSAIATDAKQVLLEFEPQQVFEQLKQTPEGEKILQEFDELLQDYGYLSEVGTDISVPTWRENPQMIKQ 720 
WD40-rpts                                                                                      

Query      721 MFVQLMQGNEPRSGAKDAINSIFAGKRKRSFVQRRVDIKGRVTEVYSRLLAELRWSFVALEKIWLKSGLLQKAGDIFFLN 800 
WD40-rpts                                                                                      

Query      801 FDEVRRLVVGDDFRLIEELDKLVESRRSQFVQDSEIIQVPLLVYGNTPPHPLAPSALYSDQILQGIGASHGQAEGRVKVL 880 
WD40-rpts                                                                                      

Query      881 RNLQDVPEIDRDTILVVPYTDSGWAPLLLRAGGLIAEVGGRLSHGAIVAREYGIPAVMDVRGATWLLQDGQRVRIDGSRG 960 
WD40-rpts                                                                                      

Query      961 IVELSNDLRPE 971 
WD40-rpts                 

1 WD40-repeats found in QUERY=gi_186681772_ref_YP_001864968.1_ (Len=971):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    31-128      3.26  249.30  0.02687       32.5%      7.52

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-128    TGKQLSQVGTRNISV-SAAFYHGGKFVGILAVLSEAFKGIAAVFLTRLFFPEGSFWELIALIALVIGRYWIGRGAGTTNVVWGFVVHDPLVAIFVSFFA

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGK-----------------------RLVSGS--------------------EDGTIKVW----------------D