Input parameters:
Query = gi_186681791_ref_YP_001864987.1_ (Len=283)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186681791_ref_YP_001864987.1_, Len=283):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MCNLLNLSSSLNNTGYITMPHSDQSSKKQTSQQKNYVGIFADIQNVSLIKGKGHFLLEFAQSKGRIDCKNVYYNSHYINQ 80
WD40-rpts
Query 81 VCTKNELEILGIKCVDVPDHSNNSADYRLMADCVKAVAFNPSLTTIILLSGDWDYAGLICILKSLGKKVKIFAQRGSESP 160
WD40-rpts (_____________________________WD 1_____________________________)
Query 161 KLIKLVGNDNFHFVDELPQLVANTNKTQPQNTDIVSQINYKEAIEYLIEAIKIASMQGKPTVFGRIDRLMRQRCANYQGY 240
WD40-rpts
Query 241 LSICTDDGKKFKSFSQFIDVAVKDGKVQKQNQKLFLTDLDTAA 283
WD40-rpts
1 WD40-repeats found in QUERY=gi_186681791_ref_YP_001864987.1_ (Len=283):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 90-153 2.99 238.28 0.03763 20.0% 23.11
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 90-153 LGIKCVDVPDHSNNSADYRLMADCVKAVAFNPSLTTIILLSGDWDYAGLICILKSLGKKVKIFA
WD40 Template TGECLRTLSGHTSGVTS------------VSFSPDGKRLVSGSED------------GTIKVWD