WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: gi_186681873_ref_YP_001865069.1_ [Nostoc punctiforme PCC 73102] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = gi_186681873_ref_YP_001865069.1_ (Len=1833) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (gi_186681873_ref_YP_001865069.1_, Len=1833): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTDSQPLEDRHVNSDVYDGLHLRSLKQLAWAIESSVGQFKLILARCNYASLRDRLISRLQEICQVEIRVLAVQQSNRTLY 80
WD40-rpts
Query 81 TAIQEEFGEEIPACVMVVGLESVQNLSVMLTSANQVREEFRKNFAFPLVLWIDDEIYKQLIQLAPDLESWATMRNFEIST 160
WD40-rpts
Query 161 QELVDFVTETANQWFSNNLKLSYNEYLKLKTELETAQRYLLSDKYVANLEVEANLVSLLGFVSQINDINIALENYQKAQS 240
WD40-rpts
Query 241 MWQKLNNIKRQNKISYNTAFCYNIKCFRNLDINHYDWQANRKYAQEYIKFLVQSQRPDLIADSIFKFGYVLRDLKEWQCL 320
WD40-rpts
Query 321 KQLAEIALEIHKANNQPVDLAKDYGFLAEAALAQEYWLEANQLIEKALEIFLPVIHSLKSKNIPGYLSEINDLFDFADLL 400
WD40-rpts
Query 401 FIPNDFSLYMFIKARSLYHLGQPHKAITILEASIPISVPNCNLKLYLDIIRFLQQLYFEQKEYLKAYKIKQQQRSIEQQF 480
WD40-rpts
Query 481 GLRAFIGAGRLEATKQAFVETLRSNSPQGNIAPEIAASGRLLDIERLIERMGRPDYKLIVIHGQSGVGKSSLVNAGLVPA 560
WD40-rpts
Query 561 LKDKAIGVQDYLPVVMRVYTNWAEELGRLLGRDLVRLRSPTEGWGDKGDEGELEGQLPPSEGQHSASEGQHSASEGQHSA 640
WD40-rpts
Query 641 SEGQVSASEGQVSASEGQVSASEGQLPPSEGQLSSSEGQLSSSEGQLSPSEGQLPPSEGQLSSSEGQVSSSEGQLPPSEG 720
WD40-rpts
Query 721 QLPPSEGQLSSLELGTTQYLISRLKENEQRNLRTVLIFDQFEEFFFVYTEPAQRKQFFEFLGECLNVLSVKVILSLRVDY 800
WD40-rpts
Query 801 IHYLLECNDLSSLKIIGNDILSNNVLYKLGNFSPTDTKSIIQRLTENTSFYLEPALVEQLVLDLAGELGEVRPIELQVVG 880
WD40-rpts
Query 881 AQLQTENITTLAEYRQRGTKDELVKRYLDEVVNDCGVENQQAADILLYLLTDEKGTRPLKTRAELERDLQGYFSEIPPTP 960
WD40-rpts
Query 961 LKKGGFILSTPFLRGSPQAGGSEARAKQASEINKLDLILEIFVQSGLVVLLPENPADRYQLVHDYIAAFIRQQQEPKLKQ 1040
WD40-rpts
Query 1041 VMAELEKERKERKLSEAKLNSFLKRALFSTVAAGLGFAGLAAATFQWAVEANVNQISAINNSSEAFALSEKYPDALIAAL 1120
WD40-rpts
Query 1121 KAGSKLKHTLWAQHRSDILMQTVVTLQQAVYLKPKEKKENRAIEVNTLEGHSDWVSSVAYSPNGYQLASASADKTIKIWD 1200
WD40-rpts (_________________WD 1________________)
Query 1201 VSSGQLLKTLTGHSDRIRSIAYSPNGQQLVSASADKTIKIWDVSSGKLLKTLTGHTSAVSSVAYNPNGQQLASASDDNTI 1280
WD40-rpts (_________________WD 2________________) (_________________WD 3_____________
Query 1281 KIWDISSGKLLKTLPGHSSVVNSVAYNPNGQQLASASNDKTIKIWDINSGKLLKSLTGHSSEVNSVAYSPNGQQLASASF 1360
WD40-rpts ___) (_________________WD 4________________) (_________________WD 5_________
Query 1361 DNTIKIWDISSGKLLKTLTGHSNVVFSVAYSPNGQHLASASADKTIKIWDVSSGKPLKSLAGHSNVVFSVAYSPNGQQLA 1440
WD40-rpts _______) (_________________WD 6________________) (_________________WD 7_____
Query 1441 SASDDKTIKVWDISNGKPLESMTDHSDRVNSVVYSPNGQHLASPSYDKTIKIWNVSSGKLLKTLTGHSSEVNSVAYSPNG 1520
WD40-rpts ___________) (_________________WD 8________________) (_________________WD 9_
Query 1521 QQLASASWDKTIKVWDVNSGKPLKTLIGHSSVVNSVAYSPNGQQLASASFDNTIKVWDVSSGKLLKTLTGHSNAVSSVAY 1600
WD40-rpts _______________) (_________________WD10________________) (_________________W
Query 1601 SPNGQQLASASLDNTIKIWDVSSAKLLKTLTGHSDAVSSVAYSPNGQQLASASDDNTIKIWDVSSGKLLKSLSGHSNAVY 1680
WD40-rpts D11________________) (_________________WD12________________) (______________
Query 1681 SIAYSPNGQQLASASADNTIKIWDVSSGKLLKSLSGHSDWVMRVTYNPNGQQLASASVDKTIILWDLDFDNLLHSGCNLL 1760
WD40-rpts ___WD13________________) (_________________WD14________________) (_____
Query 1761 NNYLIGHPEVLEELQSCQTPSRLAQGATTLVIQGEKLARNDDINGAVEKFDKAQQWDNKLKFDSQARAKELAK 1833
WD40-rpts _____________WD15__________________)
 15 WD40-repeats found in QUERY=gi_186681873_ref_YP_001865069.1_ (Len=1833): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 11 1162-1200 9.32 499.76 1.1e-05 47.5% 55.77 WD 2: Seg 15 1204-1242 10.90 564.80 1.5e-06 50.0% 57.43 WD 3: Seg 19 1246-1284 11.20 577.13 1.0e-06 55.0% 57.17 WD 4: Seg 23 1288-1326 10.77 559.71 1.8e-06 52.5% 54.42 WD 5: Seg 27 1330-1368 10.82 561.58 1.7e-06 52.5% 56.28 WD 6: Seg 31 1372-1410 10.80 560.85 1.7e-06 52.5% 56.16 WD 7: Seg 35 1414-1452 10.60 552.64 2.2e-06 52.5% 55.75 WD 8: Seg 39 1456-1494 9.83 520.62 6.0e-06 42.5% 49.60 WD 9: Seg 42 1498-1536 10.66 555.08 2.1e-06 57.5% 56.00 WD10: Seg 46 1540-1578 10.62 553.43 2.2e-06 57.5% 56.95 WD11: Seg 50 1582-1620 10.97 567.89 1.4e-06 52.5% 55.59 WD12: Seg 54 1624-1662 10.76 559.26 1.8e-06 50.0% 55.93 WD13: Seg 58 1666-1704 10.97 567.91 1.4e-06 50.0% 56.29 WD14: Seg 62 1708-1746 10.23 537.22 3.6e-06 45.0% 55.57 WD15: Seg 66 1755-1796 7.15 410.13 0.00018 22.5% 46.29Multiple sequence alignment of 15 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1162-1200 -AIEVNT--LEGHSDWVSSVAYSPNGYQLASASADKTIKIWD WD 2 1204-1242 -GQLLKT--LTGHSDRIRSIAYSPNGQQLVSASADKTIKIWD WD 3 1246-1284 -GKLLKT--LTGHTSAVSSVAYNPNGQQLASASDDNTIKIWD WD 4 1288-1326 -GKLLKT--LPGHSSVVNSVAYNPNGQQLASASNDKTIKIWD WD 5 1330-1368 -GKLLKS--LTGHSSEVNSVAYSPNGQQLASASFDNTIKIWD WD 6 1372-1410 -GKLLKT--LTGHSNVVFSVAYSPNGQHLASASADKTIKIWD WD 7 1414-1452 -GKPLKS--LAGHSNVVFSVAYSPNGQQLASASDDKTIKVWD WD 8 1456-1494 -GKPLES--MTDHSDRVNSVVYSPNGQHLASPSYDKTIKIWN WD 9 1498-1536 -GKLLKT--LTGHSSEVNSVAYSPNGQQLASASWDKTIKVWD WD10 1540-1578 -GKPLKT--LIGHSSVVNSVAYSPNGQQLASASFDNTIKVWD WD11 1582-1620 -GKLLKT--LTGHSNAVSSVAYSPNGQQLASASLDNTIKIWD WD12 1624-1662 -AKLLKT--LTGHSDAVSSVAYSPNGQQLASASDDNTIKIWD WD13 1666-1704 -GKLLKS--LSGHSNAVYSIAYSPNGQQLASASADNTIKIWD WD14 1708-1746 -GKLLKS--LSGHSDWVMRVTYNPNGQQLASASVDKTIILWD WD15 1755-1796 SGCNLLNNYLIGHPEVLEELQSCQTPSRLAQGATTLVIQGEK WD40 Template TGECLRT--LSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |