Input parameters:

  Query = gi_186681982_ref_YP_001865178.1_ (Len=678)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186681982_ref_YP_001865178.1_, Len=678):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MICCLNPDCLNPLNPNGKKFCQSCSTPLVSLLRNRFRVIRVLSDEGGFGRTYLSEDVDKLNERCVIKQLAPKFQGTWSQK 80  
WD40-rpts                                                                                      

Query       81 KAMELFAEEAQRLQDLGEHPQIPTLIAYFEQEGCLYLVQQFINGDNLLKELQQRKGYNARDIQSILLDLLPILKFIHDRK 160 
WD40-rpts                                                                                      

Query      161 VIHRDIKPENIIRHKSDGRLSLIDFGSSKQFTAKVQHKSGTSIGSHGYSPLEQIRDGKAFPASDLFGLGATCFHLLTGTS 240 
WD40-rpts                                                                                      

Query      241 PFQLWMESGYAWVSNWREYLRSPLNTELDFVIDKLLKKDIHERYQSADEVLKDLTPKQLLALPPAGKSSGKIPATQAPSL 320 
WD40-rpts                                                                                      

Query      321 PKSYPLLRTLILVSAFILLFGFQESWYKNFRRIQTSLVSRLSQHNNSGKDDVLLGQPPKITLGKVSLANTLQGHENSVLS 400 
WD40-rpts             (_____________________________________________WD 1_______________________

Query      401 VAISPDGKTIASSGGDGIIKLWNLSIGKEISSLNAYSQQVNTVVISPDGKTLVSASDDSTIKIWNLATGKQIRTLTGHSD 480 
WD40-rpts      ______________________)   (_________________WD 2________________)   (___________

Query      481 SVRALAISADSETLVSGSDDNTIKIWDLATGEQIRTLVGHTFWVRSVAISPDSVILASGSFDKTIKIWNLTKGYSIRTLE 560 
WD40-rpts      ______WD 3________________)   (_________________WD 4________________)   (_______

Query      561 GNYQTVTAVAISPDGKILASASRDRTIKLWDLLTGKEIRTLAGHANTVTTVAFSADGKIIASGSRDRAIKLWNSATGEEI 640 
WD40-rpts      __________WD 5________________)   (_________________WD 6________________)   (___

Query      641 LTLTGHTNTVTSVAFSPDSKTLVSGSEDNTIKIWRLSQ 678 
WD40-rpts      ______________WD 7________________)   

7 WD40-repeats found in QUERY=gi_186681982_ref_YP_001865178.1_ (Len=678):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   328-423      7.24  413.54  0.00017       45.0%     51.50
  WD 2:  Seg 14   427-465     10.75  558.69  1.8e-06       45.0%     57.41
  WD 3:  Seg 18   469-507     11.01  569.59  1.3e-06       50.0%     54.42
  WD 4:  Seg 22   511-549     10.86  563.24  1.6e-06       57.5%     53.20
  WD 5:  Seg 26   553-591     10.95  566.97  1.4e-06       55.0%     52.39
  WD 6:  Seg 30   595-633     10.95  567.06  1.4e-06       52.5%     54.89
  WD 7:  Seg 34   637-675     11.62  594.58  6.0e-07       67.5%     48.83

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  328-423    RTLILVSAFILLFGFQESWYKNFRRIQTSLVSRLSQHNNSGKDDVLLGQPPKITLGKVSLANTLQGHENSVLSVAISPDGKTIASSGGDGIIKLWN
   WD 2  427-465    -GKEISS--------------------------------------------------------LNAYSQQVNTVVISPDGKTLVSASDDSTIKIWN
   WD 3  469-507    -GKQIRT--------------------------------------------------------LTGHSDSVRALAISADSETLVSGSDDNTIKIWD
   WD 4  511-549    -GEQIRT--------------------------------------------------------LVGHTFWVRSVAISPDSVILASGSFDKTIKIWN
   WD 5  553-591    -GYSIRT--------------------------------------------------------LEGNYQTVTAVAISPDGKILASASRDRTIKLWD
   WD 6  595-633    -GKEIRT--------------------------------------------------------LAGHANTVTTVAFSADGKIIASGSRDRAIKLWN
   WD 7  637-675    -GEEILT--------------------------------------------------------LTGHTNTVTSVAFSPDSKTLVSGSEDNTIKIWR

   WD40 Template    TGECLRT--------------------------------------------------------LSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD