Input parameters:

  Query = gi_186682047_ref_YP_001865243.1_ (Len=687)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186682047_ref_YP_001865243.1_, Len=687):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLCCVNPDCQKPLNPDKNNYCHSCRAELIPLLGGRYRPTQVLSDEGGFGRTYLAEDVHKLNECCVVKQFAPKLQGTGPLT 80  
WD40-rpts                                                                                      

Query       81 KAIELFKQEASRLQELAEHPQIPTLLAYFEQNGYLFLVQQFIDGKNLLKEWERRGNYSETEIRELLLDLLPVLKFIHVRG 160 
WD40-rpts                                                                                      

Query      161 VIHRDIKPQNIIRRQSDGRLVLIDFGASKQLTVTVQTKMGTVIGSHGYTALEQMQDGKAYPASDLFSLGATCFHLLTGVR 240 
WD40-rpts                                                                                      

Query      241 PSQLWVQQGYSWVGSWRQYLISPGKDGVSVSIELGEVLDKLLQLDIQKRYESADEVIADLTPGLSPLPSLPVTVLTSTFA 320 
WD40-rpts                                                                                      

Query      321 STPGNKRPFSLRLNNTLKSQLLLISSISVLGLAGVWYFQTRPHTMSEYSPSNSPPTSLPISLPSKSDFLPKAFKGHSSDV 400 
WD40-rpts                             (_________________WD 1________________)    (_____________

Query      401 NSVAFSPDGTTLGSASDDKTIKLWNLARGEEIHTLEGHSNWIWTVAFSPDSKTLASGSADKTIKLWNVETGKLVRTLEGN 480 
WD40-rpts      ____WD 2________________)   (_________________WD 3________________)   (_________

Query      481 TDGVTSVAFSPDGKTLASGTASKDIRIKLWNVKTGKLIRTLEGHTDGVPSVAFSPDGKTLASGSWDKTIKLWNLNTGKEI 560 
WD40-rpts      _________WD 4_________________)   (_________________WD 5________________)   (___

Query      561 RTLKGNAESILSVAFAPDGVTLASGSKDKTIKLWNLNTGKEIRTLKGHKDKVNSVAFLPSGTQNGLTLVSGSSDKTIKLW 640 
WD40-rpts      ______________WD 6________________)   (___________________WD 7__________________

Query      641 NPLTGKEIRTLDTGSGYIYAIAISPDGETIAGGGSGENILKIWQPIH 687 
WD40-rpts      )   (_________________WD 8_________________)   

8 WD40-repeats found in QUERY=gi_186682047_ref_YP_001865243.1_ (Len=687):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   344-382      3.96  278.07  0.01109        7.5%      5.38
  WD 2:  Seg 11   387-425      8.56  468.46  3.0e-05       47.5%     46.71
  WD 3:  Seg 15   429-467     11.21  577.60  1.0e-06       52.5%     55.16
  WD 4:  Seg 19   471-511     10.23  537.04  3.6e-06       62.5%     51.30
  WD 5:  Seg 23   515-553     11.63  595.03  5.9e-07       65.0%     53.18
  WD 6:  Seg 27   557-595     10.82  561.60  1.7e-06       50.0%     52.19
  WD 7:  Seg 31   599-641      9.42  503.95  1.0e-05       55.0%     55.05
  WD 8:  Seg 35   645-684      8.75  475.99  2.4e-05       30.0%     47.20

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  344-382    ISSISVLGLAGVWYFQTRPHT----MSEYSP-SN--SPPTSLPISL
   WD 2  387-425    DFLPKAFKGHSSDVNSVAFSP----DGTTLG-SA--SDDKTIKLWN
   WD 3  429-467    GEEIHTLEGHSNWIWTVAFSP----DSKTLA-SG--SADKTIKLWN
   WD 4  471-511    GKLVRTLEGNTDGVTSVAFSP----DGKTLA-SGTASKDIRIKLWN
   WD 5  515-553    GKLIRTLEGHTDGVPSVAFSP----DGKTLA-SG--SWDKTIKLWN
   WD 6  557-595    GKEIRTLKGNAESILSVAFAP----DGVTLA-SG--SKDKTIKLWN
   WD 7  599-641    GKEIRTLKGHKDKVNSVAFLPSGTQNGLTLV-SG--SSDKTIKLWN
   WD 8  645-684    GKEIRTLDTGSGYIYAIAISP----DGETIAGGG--SGENILKIWQ

   WD40 Template    GECLRTLSGHTSGVTSVSFSP----DGKRLV-SG--SEDGTIKVWD