Input parameters:

  Query = gi_186682256_ref_YP_001865452.1_ (Len=414)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186682256_ref_YP_001865452.1_, Len=414):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MARLDKKELGVRSEQLIPLSLPFSGKLAQEFLSTYGSPLYVYNGDHLRETIECITKAISYRRTQFRFASVTNGNIALLKI 80  
WD40-rpts                                        (_____________________________________WD 1____

Query       81 FRSFGWGLHANTPGDIYLGLQAGFDPSEIVYSGSNLNRAEMIQVLNWGVTTLNLDSLAQLQLCCKVLPKHREKSIRLGLR 160 
WD40-rpts      ________________________________)                                               

Query      161 LNLPEITGDSRIGVRPEEFGDAIALTREVGLKLSGLHFYRGTGTNATEAFTQVIDAVIATAQLLPDWEYLDFGGGFGYPY 240 
WD40-rpts                                                                                      

Query      241 HHNKTAFDWEVFGAELSERITHLGRKIDLVIEPGRSAIAGCATLLAQVVSVKWQGEKQIIGVDTTVANLSVPSVHGGYRE 320 
WD40-rpts                                                                                      

Query      321 IFTWKQADNLRSLFTTDICGNTTYSRDYLGKNCQLPALEIGDIVAILDVGAYGYAMSSHFLHRPKPAEVLLENGTHRLIR 400 
WD40-rpts                                                                                      

Query      401 RREDYSVLLTNQVL 414 
WD40-rpts                    

1 WD40-repeats found in QUERY=gi_186682256_ref_YP_001865452.1_ (Len=414):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    35-113      2.83  231.62  0.04606       15.0%     26.21

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-113    YGSPLYVYNGDHLRETIECITKAISYRRTQFRFASVTNGNIALLKIFRSFGWGLHANTPGDIYLGLQAGFDPSEIVYSG

   WD40 Template    TGECLRTLS-----------------GHTSGVTSVSFSPD------------GKRLVS----------GSEDGTIKVWD