Input parameters:
Query = gi_186682355_ref_YP_001865551.1_ (Len=139)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186682355_ref_YP_001865551.1_, Len=139):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MQNILKRAFLPGLMAATLAGTSLIPVQPASADDRVVNNAAIGAGAGVLSGVLTNCGSLLDNAFKGAAAGAAVNAANGARS 80
WD40-rpts (___________________________________WD 1_____________________
Query 81 TRARRRNGRLPVQDIGVGAGAGVLAGAISGGCRTTWKNGVNGAAAGAAVNLLDNRRRRR 139
WD40-rpts _____________)
1 WD40-repeats found in QUERY=gi_186682355_ref_YP_001865551.1_ (Len=139):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 20-94 3.37 253.80 0.02341 25.0% 18.53
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 20-94 GTSLIPVQPASADDRVVNNAAIGAGAGVLSGVLTNCGSLLDNAFKGAAAGAAVNAANGARSTRARRRNGRLPVQD
WD40 Template GECLRTLSGHTSG--------------VTSVSFSPDGKRL-------VS--------GSE-------DGTIKVWD