Accession: gi_186682446_ref_YP_001865642.1_ - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = gi_186682446_ref_YP_001865642.1_ (Len=1897)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186682446_ref_YP_001865642.1_, Len=1897):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSEIQIKSGFFKLRITNYELRIKTMTIADQNQLSSSKRLLFALDEALAKIEATERSKNEAIAVIGMGCRFPGGANNPET 80  
WD40-rpts                                                                                      

Query       81 LWQLLCDGLDATREVPPERWDIDSLYHPDPDIPGKMYVRSAGFLSDIDQFEPQFFGISPREAASTDPQQRLLLEVCWEAL 160 
WD40-rpts                                                                                      

Query      161 ERAGEAPDKLAGSQTGVFIGVTANDYARLQSQALDQIDSYYITGNTLNAAAGRLSYTLGFQGPSMSIDTACSSSLVAIHQ 240 
WD40-rpts        (___________________________WD 1___________________________)                  

Query      241 ACQSLRNGECNQALAGGVNLILSPEVTVALCRTRMLSPEGRCKTFDADADGFARGEGCGIIVLKRLSDAQADKNNILAVI 320 
WD40-rpts                                                                                      

Query      321 RGSAINQDGASSGFTVPNCSAQQTVIRQALKNAKVDFSEVSYIEAHGTGTSLGDPIEVRAIAGVLGKKRSPEDPLKIGTV 400 
WD40-rpts                                                                                      

Query      401 KTNIGHLESAAGVAGVIKTILQLQHQQIVAHLHLKQLNPHINWEELAITVPTKQTAWQAKKGRRIAGVSAFGASGTNAHL 480 
WD40-rpts                                                                                      

Query      481 ILEEAPVEEAGEQGSRGAGEQGSRGAGEQGRNSSKSFPSASCDRPLHILSLSAKTPEALKQLASNYESHLAAHPEESFTD 560 
WD40-rpts                                                                                      

Query      561 TCFTANTGRSQLAYRLSIVADSGEQAGDRLNAWKAGETSAAGIWQGQQPTAKPKIAFLFAGQGSQCAGVGRELYATQPTF 640 
WD40-rpts                                                                                      

Query      641 KAALDKCADILRSYLDIPLLELLWGSSSHLIDQTAYTQPAIFAIEYALYQLWQSWGIQPNAVFGHSVGEYIAACVAGVFS 720 
WD40-rpts                                                                                      

Query      721 LEDGLKLIATRAKLMQALPSGGGMAAVLVDKSQLLQALSPYAQQVVIAAYNGPRSFTISGAVEALEAVCKTLEAQGARTK 800 
WD40-rpts                                                                                      

Query      801 RLNVSHAFHSSLMQPMLKEFEVVARQIDYHQPRIPLIANLTGQAAQREIATPEYWVKHVREAVQFEKSVQTLQQSGYELF 880 
WD40-rpts                                                                                      

Query      881 LELSTKPTLLGMARQCLPENSAVWLPSLHPGQSDWYSILPTLAQLYAHGVTVDWLGFDRDYTRAKVILPTYPWQRQRCWV 960 
WD40-rpts                                                                                      

Query      961 KSRAKATSLHKLHPLLDKQLRSPLSKDIFFESRFGTKLLPFLGDHLVYSEVVVPGACHLSLLLAAAKSTFKNSGCVLENV 1040
WD40-rpts                                                                                      

Query     1041 VFPQALAIAQDKERIVQLALTAENVDFAFKLISFEEEEADNWAVHATGKVTTAYGKPSTVSRSEVESRCTRELASIQLYE 1120
WD40-rpts                                                                                      

Query     1121 ALRERNIDLGTSFRWLNSIHLGEREALGCLKVPTTILDAAEYELHPTLIDSCFQLFFAITPIEGEETFIPFSLEKFQFYQ 1200
WD40-rpts                                                                                      

Query     1201 RPESELLWCHAKLRSLDTIQADRVIGDLQLFDQTGQLIAEVTGFEGRKANRQAVLRNFQAETGNWLYQVHWQPQQLSILP 1280
WD40-rpts                                                                                      

Query     1281 THPQSGSWLLFAHDYEQGLQLAQQLRDRSQHCIIATVGTSYKQLNQETYQVNPTQPEDFQQLLEDSLSQQPPLRGVVYLE 1360
WD40-rpts                                                                                      

Query     1361 ASAIPEDVSLNALREAQTVSYASALHLVQAVVQTPGLEAPRFWIVTRGTQAVSKNPVPLQVSQAALWGLGRVINHEHPEL 1440
WD40-rpts                                                                                      

Query     1441 SCTCVDLAANAEADMEILLSELSSPDSENQISYHQGVRHVARLERYRGRSQNKDFKVAKDGSYLITGGLGALGLESAEWL 1520
WD40-rpts                                                                                      

Query     1521 VEQGAQHLILVGRNQPSATAQDTITQLENAGAQVLVVTADISDAAAATGVFEFIRSSLPPLRGVIHSAGVVDDGALRQLS 1600
WD40-rpts                                                                                      

Query     1601 WERFNRVLEPKVAGAWNLHCLTQDLTLDFFVCYSSIASLIGTPGQGSYAVANAFMDALVCDRQAHGLPGLSINWGPWAEV 1680
WD40-rpts                                                                                      

Query     1681 GMAARLENRSQSKIVAQGISGITSEKGFQVLGELLGQAAYQVGVLPINWNQFFEQSSFGIDEKFFEAFTPKLEQPEAEEF 1760
WD40-rpts                                                                                      

Query     1761 DVLQQLKAAPINEQRALLTTHVCNQVAKVIALDPSQINPQQGFFDLGMDSLTSVELKQRLQKSLGCQIPDTFVFNYPTIE 1840
WD40-rpts                                                                                      

Query     1841 AAVNYIAEKVLETETPSAATESASNNENLLLEFSESLEELSEAQIAELLTLKLDALD 1897
WD40-rpts

1 WD40-repeats found in QUERY=gi_186682446_ref_YP_001865642.1_ (Len=1897):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   163-222      3.61  263.77  0.01723       25.0%     -2.85

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  163-222    AGEAPDKLAGSQTGVFIGVTANDYARLQSQALDQIDSYYITGNTLNAAAGRLSYTLGFQG

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD------------GKRLVSGSED----G----TIKVWD