Accession: gi_186682448_ref_YP_001865644.1_ - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = gi_186682448_ref_YP_001865644.1_ (Len=1850)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186682448_ref_YP_001865644.1_, Len=1850):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSNYTSETLSSSERILQALLDARTQLEAVEQKKTEPIAIIGMGCRFPGGVKNPQAYWDLLRDGVDAIAPIPSDRWDVNRC 80  
WD40-rpts                                                                                      

Query       81 YHPDHDAPGKMYVRNGGFINEVDEFDPEFFGISPREAEGMDPQQRLLLEVAWEALENAGQPPESLKGSSTGVFVGIGSDD 160 
WD40-rpts                                                                                      

Query      161 YSRLSVNSGDLNRIDAYSSLGSARSIAVGRVAYVLGLQGPTLQLDTSCSSSLLGIHLACQSLRTGECNLALAGGVNLMLS 240 
WD40-rpts                                                                                      

Query      241 PAMTISFCKLKALAPDGRCKTFDASADGYSRGEGCGVVVLKRLSEAIADGDNIIALIRGSAVNHDGKSNGLTAPNGLAQE 320 
WD40-rpts                                                                                      

Query      321 RLIRQALKEARVEPTQIQYVEAHGTGTSLGDPIEVLALERVLGQGRSAEEALAIGSVKTNFGHLEAAAGVASLMKVVLSL 400 
WD40-rpts                                                                                      

Query      401 SNRQIPPHLHFQNPNPHIPWGKLPIVVPTALTPWSAKEGQRFAGVSSFGMSGTNVHIILEAAPSEEEQGSRGAGEQGRSC 480 
WD40-rpts                                                                                      

Query      481 SNLFTVSAKNEVALRQLTQSYQEFLEAQPEISIDDVCYTANVGRSHFDHRLAITTESIAELQQQLAAFNAGNETAGVLTS 560 
WD40-rpts                                                                                      

Query      561 PVRDTLSKIAFLFAGQGSQQVGMGRELYATQPIFKVAIDQCADILTRLDVPLLEILWGNSSHLLDQTAYTQPAIFAIEYA 640 
WD40-rpts                                                                                      

Query      641 LDQLWQSWGIQPDAVLGHSVGEYIAACVAGVFSLEDGLKLIVARSRFMQALPSGGAMAAVLVDKSKLLEVLNIYKNEVVI 720 
WD40-rpts             (________________________________________WD 1____________________________

Query      721 AAYNAPGSFTIAGPVAAVESISQTIAAQGGKTQRLSVSHAFHSPLMEPMLGAYATIANTITYHQPRIPLIANRTGQVAGA 800 
WD40-rpts      ____________)                                                                   

Query      801 EIATPEYWVRHVREAVQFEASIQTLHEEKYELFVELSAKPTLLGMARQCLPESTGVWLPSLRPGQSDSHSLLTSLGQLYV 880 
WD40-rpts                                                                                      

Query      881 SGVTVDWSGWAGNRPSRKIVLPTYPWQRQRYWLKSLSGKPTSKLHPLVDKQLRSPLSKQTFFETRFNTELVPFIADHLVY 960 
WD40-rpts                                                                                      

Query      961 NEIVVPGASHLSLLLAAAELTFGKPGCLLENIVFPKALAIAKGKERTVQLALTPEESGNLAAQVLSFENPSHPQEQVSWI 1040
WD40-rpts                                                                                      

Query     1041 VHAIAQVSANNTTLKPVSWSEIQKRCNQEIPGADLYQAQWERQIELGASFRWLNTVWLGEREALGCLQAPPAAFDAAEYQ 1120
WD40-rpts                                                                                      

Query     1121 LHPGLIDSCFHLILAATGTINGDETFIPLSIKQFRFFQRPSSDVFWCHARLQHGTESQEDKRVGDLYLFDDAGQIIAEVI 1200
WD40-rpts                                                                                      

Query     1201 GFEARKASRAVLLNSLQSEGRDSLYQIHWQLQENVASPVNHEPGNWLIFTDGTENGLELAQQLEQQGHYSILAEVGEIYH 1280
WD40-rpts                                                                                      

Query     1281 QLGSQHYQLDPTEPEHFRQLLQDIPNLDGVIHLWGLAEDTTENLSLQGLDKAQTLGCASVLHLVQALVQSQQQTQPRLWL 1360
WD40-rpts                                                                                      

Query     1361 VTRGTQAIDSNLEPLQLSQTTLWGLGRVIAIEHPELNCTRLDLPLTATEDIQILLAELFSTDTEDQIAYRQGKRYVARLE 1440
WD40-rpts                                                                                      

Query     1441 QVRAQFTKSPIPVTSESTYLITGGLGALGLEVAQWLAQQGAKHLVLVGRRSPSTDAQNAIARLATAGVEVTIITADITNP 1520
WD40-rpts                                                                                      

Query     1521 QEVAQCLQQIRSSHPPLRGIIHAAGVLDDGLLLQQSWERFSRVMAPKVAGAWNLHTLTQDLPLDFFVCFSSIASLIGSVG 1600
WD40-rpts                                                                                      

Query     1601 QSNYAAANAFMDALASYRRGLGLPGLTINWGPWAETGMAANLGSREQARLKDQGIVPINPEQGLQVLGELLTQQIPQVGV 1680
WD40-rpts                                                                                      

Query     1681 MTIDWSLFVKQFSSRTNLKLFEVLAPTSTKVNERSQFLNQLEDSPPNTRQQLLATHVRSQIAQILGWNSPEKVEPRQRLF 1760
WD40-rpts                                                                                      

Query     1761 DLGVDSLMAIELKNRLESSLGCSLRTTLLFDYPTLEALVDYLSREVLALESTTAATVEIAQDDELEALLSELEQMSEFDI 1840
WD40-rpts                                                                                      

Query     1841 QNKLVNLSHA 1850
WD40-rpts

1 WD40-repeats found in QUERY=gi_186682448_ref_YP_001865644.1_ (Len=1850):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   648-733      3.19  246.50  0.02927       15.0%     33.65

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  648-733    WGIQPDAVLGHSVGEYIAACVAGVFSLEDGLKLIVARSRFMQALPSGGAMAAVLVDKSKLLEVLNIYKNEVVIAAYNAPGSFTIAG

   WD40 Template    TGECLRTLSGHT-------------S----------------------GVTSVSFS-----------PDGKRLVSGSEDGTIKVWD