Input parameters:

  Query = gi_186682460_ref_YP_001865656.1_ (Len=603)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186682460_ref_YP_001865656.1_, Len=603):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLVLSEATTQLKYPSKAFVSFPESNSLIADIQASTSLDTFAFNNQDSESISVASAIVKMLEDLGVEYAFGVSGGAIAPVW 80  
WD40-rpts                                                                                      

Query       81 YKLQHSSIKLLHFRHEAGAAFAATEAYFASGRPVVVFTTSGPGITNALTGLLAARWEDAKVIFLSASTSAPQRGRWALQE 160 
WD40-rpts          (_________________________________WD 1_________________________________)    

Query      161 TSTYTMPSAGLFTSDSLFHYATTLECSEELPEVYRRLAKGLARPDGFVAHLSIPTNIQTNSVEKSLPPVTLSFAAPTASD 240 
WD40-rpts                                                                                      

Query      241 EAISECGHLLSEGPFAIWVGFGARFAAAEIRQLAERTGAGVMCSPRGKGIFPEDHPQFVGITGFAGHESVLRYMQEHRPL 320 
WD40-rpts                                                                                      

Query      321 RTLVLGTRLGEFTSFWNPAMIPLRGFLHVDINPDVPGTAYPSSETIAIQSDVKMFVKALLKRFPKRQNRAKKQSLPRPER 400 
WD40-rpts                                                                                      

Query      401 SVINASTNSPVRPEVLMNLMQRVIVEGSDAIVMAEGGNSFAWAINLLRFSKPGRFRVSTGFGAMGHFVTSVVGAALTHQG 480 
WD40-rpts                                                                                      

Query      481 KAIAIVGDGAMLMNNEVSTAVRYQIPAVWIVLNDARYNMCEQGSQMQGYESMDVEIPQTDFVMLARSMGADGIRVEKESD 560 
WD40-rpts                                                                                      

Query      561 IQAALEIAMASTSPFVIDVLIDHTRLAPIGTRIFSLMSQGAKN 603 
WD40-rpts                                                 

1 WD40-repeats found in QUERY=gi_186682460_ref_YP_001865656.1_ (Len=603):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    85-156      2.89  233.84  0.04306       12.5%     19.26

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   85-156    HSSIKLLHFRHEAGAAFAATEAYFASGRPVVVFTTSGPGITNALTGLLAARWEDAKVIFLSASTSAPQRGRW

   WD40 Template    TGECLRTLSGH----------------TSGVTSVSFSPD----------------GKRLVSGSEDGTIKVWD