Input parameters:

  Query = gi_186682464_ref_YP_001865660.1_ (Len=1175)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186682464_ref_YP_001865660.1_, Len=1175):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTQVQKQKRKRGLILTLEGLQKLQSGKIALEDRENYGNRYTLEDLSERVKVNTVTVSKVLSRGEGVDKKTLELFFQAFNL 80  
WD40-rpts                                                                                      

Query       81 ELDKADFTNSDKSRHLDWGEAIGGSVFYGRTEEIATLEQWILKERCQIVAILGMGGIGKTSLSVKLVEQIKENFEYIIWR 160 
WD40-rpts                                                                                      

Query      161 SLQDAPPLNTLLASLIQFLSDERETEAILPESTAPRLTRLLHYLREHRCLLILDNMESILRSGSRAGLYRDGYEGYSELL 240 
WD40-rpts                                                                                      

Query      241 KRLGETEQQSCLILTSREKPKEVASMEGGGLCVRSFLLKGLLANDGQEILKIKGISASDDELRTLVARYGGNALALKVVA 320 
WD40-rpts                                                                                      

Query      321 TTIQDLFGGNVSEFLKQDAVVFGDIWDILEQQFERLSNLEKEIMYWLAINHEPVSLSELQKDIISALTFQKFLEVLESLV 400 
WD40-rpts                                                                                      

Query      401 RRSLVEKSEALFTLQPVVMEYVINRLVEQVCQEISTHNIEIFRCHALVKATTKDYVRESQIHLILKPVIEGLFAIFRSQR 480 
WD40-rpts                                                                                      

Query      481 TLENHLIQILTTLRETSPLEQSYTAGNIINLLCYLGTDLSGSDFSHLTIWQADLRNVNLQNASFVNANLAKCVFAETIGG 560 
WD40-rpts                                                                              (_______

Query      561 IHAVAFSPDGKLLATGDTNGEVRLYQVADGKQLFICKGHTGFIWPVTFSPDGHLLASGSDDQTVKLWDTSTGQCLATFQG 640 
WD40-rpts      _______WD 1______________)   (_________________WD 2________________)   (________

Query      641 HSAGIWSVSFSSDGQTLASSSEDTTVKLWDTSTGQCIQTLQGHSSRVWSVAFSPDGTILASGNDDSSIRLWDISTSQCIK 720 
WD40-rpts      _________WD 3________________)   (_________________WD 4________________)   (____

Query      721 TLVGHTHRVQSVAFSPDGDKLISGCHDRTVRLWDINTSECLYTFQSHTDLVNSVAFSSDGDRLASGSDDQTVKLWDVNTG 800 
WD40-rpts      _____________WD 5________________)   (_________________WD 6________________)   (

Query      801 LCLKTLKGHGSRVWSVAFSPDGKMLASGSDDQTVRLWDVNTGGCLKTLQGYCNGIWSVTFSSNGQILASGNNDQTVKLWD 880 
WD40-rpts      _________________WD 7________________)   (_________________WD 8________________)

Query      881 TSTGLCLKTLRGHSNRVTSVSLSQDGNLLASGSEDQTVKLWNANTGQCLKTLGGHSNRIISVAFSPDGKILATGSDDQSI 960 
WD40-rpts         (_________________WD 9________________)   (_________________WD10_____________

Query      961 KLWDVNTGKCLKTLQGHTQRIWSVAFSPDGQTLASGCHDQTVRLWDVCIGSCIQVLEGHTDWIWSVVFSPDGMTLASSSG 1040
WD40-rpts      ___)   (_________________WD11________________)   (_________________WD12_________

Query     1041 DQTVKLWDISTGKCLRTLQGHTNCVYSSAISIDGCILASGSGDQTIKLWDLSTNKEIKTLSGHNKWVWSVAFNPQGKILA 1120
WD40-rpts      _______)   (_________________WD13________________)   (_________________WD14_____

Query     1121 SGSEDETIRLWDIETGECLKTLRCERPYEGMNITGVTDLTEATIATLKVLGACNF 1175
WD40-rpts      ___________)                                           

14 WD40-repeats found in QUERY=gi_186682464_ref_YP_001865660.1_ (Len=1175):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   553-586      6.66  389.90  0.00035       27.5%     49.56
  WD 2:  Seg 12   590-628     10.07  530.56  4.4e-06       50.0%     56.98
  WD 3:  Seg 16   632-670     11.29  581.11  9.1e-07       57.5%     58.34
  WD 4:  Seg 20   674-712     11.17  576.12  1.1e-06       55.0%     57.78
  WD 5:  Seg 24   716-754     10.91  565.19  1.5e-06       52.5%     57.31
  WD 6:  Seg 28   758-796     10.74  558.31  1.9e-06       57.5%     57.49
  WD 7:  Seg 32   800-838     11.09  572.74  1.2e-06       62.5%     57.13
  WD 8:  Seg 36   842-880     10.36  542.41  3.0e-06       50.0%     57.08
  WD 9:  Seg 40   884-922     10.87  563.64  1.6e-06       60.0%     57.53
  WD10:  Seg 44   926-964     10.95  566.79  1.4e-06       57.5%     57.93
  WD11:  Seg 48   968-1006    11.02  569.88  1.3e-06       55.0%     56.71
  WD12:  Seg 52  1010-1048    10.64  554.20  2.1e-06       52.5%     57.49
  WD13:  Seg 56  1052-1090    10.61  552.80  2.2e-06       60.0%     58.70
  WD14:  Seg 60  1094-1132    10.41  544.55  2.8e-06       55.0%     57.12

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  553-586    -----VFAETIGGIHAVAFSPDGKLLATGDTNGEVRLYQ
   WD 2  590-628    GKQLFICKGHTGFIWPVTFSPDGHLLASGSDDQTVKLWD
   WD 3  632-670    GQCLATFQGHSAGIWSVSFSSDGQTLASSSEDTTVKLWD
   WD 4  674-712    GQCIQTLQGHSSRVWSVAFSPDGTILASGNDDSSIRLWD
   WD 5  716-754    SQCIKTLVGHTHRVQSVAFSPDGDKLISGCHDRTVRLWD
   WD 6  758-796    SECLYTFQSHTDLVNSVAFSSDGDRLASGSDDQTVKLWD
   WD 7  800-838    GLCLKTLKGHGSRVWSVAFSPDGKMLASGSDDQTVRLWD
   WD 8  842-880    GGCLKTLQGYCNGIWSVTFSSNGQILASGNNDQTVKLWD
   WD 9  884-922    GLCLKTLRGHSNRVTSVSLSQDGNLLASGSEDQTVKLWN
   WD10  926-964    GQCLKTLGGHSNRIISVAFSPDGKILATGSDDQSIKLWD
   WD11  968-1006   GKCLKTLQGHTQRIWSVAFSPDGQTLASGCHDQTVRLWD
   WD12 1010-1048   GSCIQVLEGHTDWIWSVVFSPDGMTLASSSGDQTVKLWD
   WD13 1052-1090   GKCLRTLQGHTNCVYSSAISIDGCILASGSGDQTIKLWD
   WD14 1094-1132   NKEIKTLSGHNKWVWSVAFNPQGKILASGSEDETIRLWD

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD