Input parameters:
Query = gi_186682493_ref_YP_001865689.1_ (Len=440)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186682493_ref_YP_001865689.1_, Len=440):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRIEPIIKVSKINHYYGTGQLRKQILFDISTEIQAGEIVIVTGPSGSGKTTLLNLIGALSSVQEGSLTVLGQELNRANNK 80
WD40-rpts
Query 81 LLENVRKNIGFIFQAHNLLTSLTASQNVQMSLALHGGISKREAERKAQAILEMVGLGERVNYYPNQMSGGQKQRVAIARA 160
WD40-rpts
Query 161 LVTNPSVILADEPTAALDKKSGRDVVEMLQYLAKQQGCAILLVTHDNRILDVADRIISLEDGFLTSSKNTSSNNSHRLAS 240
WD40-rpts (___________________________WD 1__________________________)
Query 241 LKGELINHVEDLSLKDFLSLLQQVTGEFQSFLSLIDNEATGKCLEEIIEAITLKITHLLQAERSTIFIVDDTSGNLWSEI 320
WD40-rpts
Query 321 IQSNRKKILKVGITAHFGVAAHVAATRECLNIPIALQDYRYSPAIDEQTGYQTRNILCLPILNSQSKVLAISQVLNKIGN 400
WD40-rpts
Query 401 NCFDRKDEQLLGEFSQQISAIFDMWCHLQKLHKTSISGKY 440
WD40-rpts
1 WD40-repeats found in QUERY=gi_186682493_ref_YP_001865689.1_ (Len=440):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 7 163-221 2.90 234.58 0.04210 20.0% 20.69
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 163-221 TNPSVILADEPTAALDKKSGRDVVEMLQYLAKQQGCAILLVTHDNRILDVADRIISLED
WD40 Template TGECLRTLSGHTSGVTSVS-------------FSPDGKRLVSGS------EDGTIKVWD