Input parameters:

  Query = gi_186682497_ref_YP_001865693.1_ (Len=1084)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186682497_ref_YP_001865693.1_, Len=1084):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVNSSKGDINIGYNVQGISEYDFFSDSNFEDIHCRPLKTDSPYLGLKTFELKDKDNFFGREKWIANLGDRLKKDNVLLLL 80  
WD40-rpts                                                                                      

Query       81 GASDTGKSSLIRAGLIPYLGSHKKSLINISFHPDESPFKSIYQCLASTFGKKSPIADIAREIRANTLIKIVTFLKQDYQH 160 
WD40-rpts                                                                                      

Query      161 VLIFIDQFEELFTKTQKPERDKFVASLFQLFQQQDSSVKIVLTMQSDFLDRFSEYPQLAKIHDRYSRIVTRMSDGELKLA 240 
WD40-rpts                                                                                      

Query      241 IAEPAARNGVTFEQGLVEQIIHDFHQQNDYLPLLAYTLNLLWEKENIANRVLKTKTYKELKEQTFGYLSEQANQFINASV 320 
WD40-rpts                                                                                      

Query      321 GWRDRQEQEIQKLNLALTELKLREQSARVLNLLPVQPLEGLVLAIQTMGENLEKYPNQLLAPVLGSLKEAMNTPTEANSL 400 
WD40-rpts                                                                               (______

Query      401 RGHEQEVNCVAFSPDGKFIASGSSDSTLCLWNIIGNPTAQFLCGHEQEVNCIAFSPDGKFIASGSIDGILCLWDLQGNLI 480 
WD40-rpts      ___________WD 1________________)   (_________________WD 2________________)   (__

Query      481 TQPWQGHEEGVISVAFSPNSDGCANPSGVSIVSVGFDGTVCLWDLQGNAITQPWRGHKEGVISVAFSPNGDCIISVGFDG 560 
WD40-rpts      ___________________WD 3____________________)   (_________________WD 4___________

Query      561 TVCLWDLEGNTITQPWHKHEAKIICATFSPDRKFIVSGGSDSTVRLWDIQGNPIGQPWHGHEGHVNSVAFSPDGKFIISG 640 
WD40-rpts      _____)   (_________________WD 5________________)   (_________________WD 6_______

Query      641 SCDRTIRLWNINGNSITQTWRGHEGEVNSLAFSPDGKLIISGGDRTVRLWELHQILQDRVIGRSQRKYENWVNSVAFSPD 720 
WD40-rpts      _________)   (________________WD 7________________)(____________________WD 8____

Query      721 GQWIVSASNDSTIRLWDSNGNPTGQPWQGHEKEVNSVAFSPDGQWIVSASNDSTIRLWDSNGNPIGQPWQGHEKEVNSVA 800 
WD40-rpts      ________________)   (_________________WD 9________________)   (_________________

Query      801 FSPDGQWIVSASNDSTIRLWDSNGNPIGQPWQGHEKEVNSVAFSPDGQWIVSASNDSTVRLWDSNGNPTGQPWQGHEKEV 880 
WD40-rpts      WD10________________)   (_________________WD11________________)   (_____________

Query      881 NSVAFSPDGQWIISASNDSTIRLWDSNGNPIGQPWQGHEKEVNSVAFSPDGQWIISASNDSTIRLWDSNGNPIGQPWRGH 960 
WD40-rpts      ____WD12________________)   (_________________WD13________________)   (_________

Query      961 EYWVNSAAFSPDGQWIASGSLDGTVRLWHCGWQEWLQVCCNRLHYHPVFQNPENGSDLEIAHQTCQKYVWNPQFPKQLHN 1040
WD40-rpts      ________WD14________________)   (_________________WD15________________)(________

Query     1041 QGAAKLKEKAFSAALEDFKLTVQLNFISHWKDRLAWQSVPTENQ 1084
WD40-rpts      _________WD16_________________)             

16 WD40-repeats found in QUERY=gi_186682497_ref_YP_001865693.1_ (Len=1084):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   394-432      8.60  469.78  2.9e-05       42.5%     53.58
  WD 2:  Seg 10   436-474      9.61  511.47  7.9e-06       42.5%     56.93
  WD 3:  Seg 14   478-524      8.05  447.26  5.8e-05       42.5%     56.99
  WD 4:  Seg 18   528-566      9.87  522.21  5.7e-06       40.0%     56.83
  WD 5:  Seg 22   570-608      9.48  506.25  9.3e-06       32.5%     55.99
  WD 6:  Seg 26   612-650      9.96  525.94  5.1e-06       45.0%     53.48
  WD 7:  Seg 30   654-691      8.64  471.53  2.7e-05       40.0%     53.58
  WD 8:  Seg 34   692-737      9.05  488.43  1.6e-05       45.0%     48.67
  WD 9:  Seg 37   741-779      9.97  526.50  5.0e-06       45.0%     54.12
  WD10:  Seg 41   783-821      9.91  524.13  5.4e-06       45.0%     56.43
  WD11:  Seg 45   825-863      9.94  525.28  5.2e-06       42.5%     53.55
  WD12:  Seg 49   867-905      9.91  524.13  5.4e-06       42.5%     54.97
  WD13:  Seg 53   909-947     10.10  531.75  4.2e-06       42.5%     56.30
  WD14:  Seg 57   951-989      9.73  516.44  6.8e-06       40.0%     55.40
  WD15:  Seg 61   993-1031     7.31  416.63  0.00015       15.0%     54.41
  WD16:  Seg 65  1032-1071     6.34  376.75  0.00052       10.0%     28.36

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  394-432    -PTEA------NSLRGHEQEVNCVAFSPD--------GKFIASGSSDSTLCLWN
   WD 2  436-474    -NPTA------QFLCGHEQEVNCIAFSPD--------GKFIASGSIDGILCLWD
   WD 3  478-524    -NLIT------QPWQGHEEGVISVAFSPNSDGCANPSGVSIVSVGFDGTVCLWD
   WD 4  528-566    -NAIT------QPWRGHKEGVISVAFSPN--------GDCIISVGFDGTVCLWD
   WD 5  570-608    -NTIT------QPWHKHEAKIICATFSPD--------RKFIVSGGSDSTVRLWD
   WD 6  612-650    -NPIG------QPWHGHEGHVNSVAFSPD--------GKFIISGSCDRTIRLWN
   WD 7  654-691    -NSIT------QTWRGHEGEVNSLAFSPD--------GKLIISGG-DRTVRLWE
   WD 8  692-737    LHQILQDRVIGRSQRKYENWVNSVAFSPD--------GQWIVSASNDSTIRLWD
   WD 9  741-779    -NPTG------QPWQGHEKEVNSVAFSPD--------GQWIVSASNDSTIRLWD
   WD10  783-821    -NPIG------QPWQGHEKEVNSVAFSPD--------GQWIVSASNDSTIRLWD
   WD11  825-863    -NPIG------QPWQGHEKEVNSVAFSPD--------GQWIVSASNDSTVRLWD
   WD12  867-905    -NPTG------QPWQGHEKEVNSVAFSPD--------GQWIISASNDSTIRLWD
   WD13  909-947    -NPIG------QPWQGHEKEVNSVAFSPD--------GQWIISASNDSTIRLWD
   WD14  951-989    -NPIG------QPWRGHEYWVNSAAFSPD--------GQWIASGSLDGTVRLWH
   WD15  993-1031   -QEWL------QVCCNRLHYHPVFQNPEN--------GSDLEIAHQTCQKYVWN
   WD16 1032-1071   PQFPK------QLHNQGAAKLKEKAFSAA--------LEDFKLTVQLNFISHWK

   WD40 Template    TGECL------RTLSGHTSGVTSVSFSPD--------GKRLVSGSEDGTIKVWD