Input parameters:

  Query = gi_186682530_ref_YP_001865726.1_ (Len=1258)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186682530_ref_YP_001865726.1_, Len=1258):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MINSVNINGFNNEIAIISLAGRFPEAKYLDSFWQNLRDGVESISRLTDEELINSGVSLDLLNNPNYVKANAVLSDIELFD 80  
WD40-rpts                                                                                      

Query       81 ANFFAYSAKEAELIDPQQRLFLELAWEAIEKAGYDPHTYNGLIGVYAGVGMNRYLVNNLYPHHQLLETVDPLQLTISNDK 160 
WD40-rpts                                                                                      

Query      161 DFLPTRVAYKLNLTGTAVNVQTACSTSLVAVHLACQSLLNCECDMALAGGVTLSIPQKIGYLHQEGMILSPDGHCRAFDA 240 
WD40-rpts                                                                                      

Query      241 KAQGTIASSGAGIVVLKRLKDAIADRDHIHAIIKGSAINNDGAMKVGFTAPSVSGQAAVIGEAQAIAGVDAETISYIEAH 320 
WD40-rpts                                                                                      

Query      321 GTATPLGDPIEIAALTQAFNQSTDKKGFCAIGSLKTNLGHLDTAAGVAGLIKTVLALQHQMLPPSLHFETPNPKIDFANS 400 
WD40-rpts                                                                                      

Query      401 PFYVNTTLTEWKTNNTPRRAGVSSFGIGGTNAHVILEEAPVFEQGSREGSAVLGVPPRSNCRRAGEQGRNYQLLVLSAKT 480 
WD40-rpts                                                                                      

Query      481 ASALEQATANLITHLKEHPELNLSDVAYTLNSGRRGFNYRRMLICQDLEDAVKTLSSLEAQQVFSNYTEITERSVVFMFP 560 
WD40-rpts                                                                                      

Query      561 GQGSQYVNMAREIYETETVFKEQIDYCSEVLKPLLGLDLRHILYPSEEKIHEASKQLQQTAVAQPAIFVIEYALAKLWQS 640 
WD40-rpts                                                                                      

Query      641 YGVEPQAAIGHSIGEYVAATLAEVFSLEDVLSLVAARGQMMQQLPTGAMLSIPLPADKIKSQLGQELSVAAINQPSQCVV 720 
WD40-rpts      (______________________________________WD 1_____________________________________

Query      721 SGSTAAVDTLQNQLAAQGIECRQLHTSHAFHSQMMEPILKAFAERVKKVTLNPPKLPYISNLTGTWITVTQATNPDYYAQ 800 
WD40-rpts      _)                                                                              

Query      801 HLRSTVLFAQGVEKLLATPEQVLLEVGPGHTLTTLVKRHPDKAAAQTVLTSVRHPQEKQSDNHVLFTTLGQLWLAGVNID 880 
WD40-rpts                                                                                      

Query      881 WFGFYSHQEHYRLPLPTYPFERQRYWIDPPQKTAWGQLQALPTPSQLWTSLVQGGQNQANTKNAELNELTYQENRQWLNR 960 
WD40-rpts                                                                                      

Query      961 LCTAYINSAFRQLGAFSNVEEKYSLENLLVQCHISPRYQQLFSRWLQILVEQGQLQEQEGLFTGLRPCSQDYINEHLEEV 1040
WD40-rpts                                                                                      

Query     1041 RARFATSSLVDLDLVQRCGENLAAIVVEQEPLEIFNELVYQKGNNGSHSESPLNTYYNSILHSSLEQVVKLLPLPQASAS 1120
WD40-rpts                                                                                      

Query     1121 AAFSIKSRLEQNNQKSEISLQKKPDIFQPEKLSALHSRPDLPNSYVAPRNEIEQKIADIWEELLGIKQVGIHDNFFKLGG 1200
WD40-rpts                                                                                      

Query     1201 DSLIAVQVLSRIRNIFSIRLSVANLFESPTIAEIAPKLEKQIDPDTNFSAGEREEITI 1258
WD40-rpts                                                                

1 WD40-repeats found in QUERY=gi_186682530_ref_YP_001865726.1_ (Len=1258):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14   641-722      3.31  251.54  0.02508       15.0%     33.91

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  641-722    YGVEPQAAIGHSIGEYVAATLAEVFSLEDVLSLVAARGQMMQQLPTGAMLSIPLPADKIKSQLGQELSVAAINQPSQCVVSG

   WD40 Template    TGECLRTLSGHT-------------S---------------------GVTSVSFS--------PDGKRLVSGSEDGTIKVWD