Input parameters:

  Query = gi_186682570_ref_YP_001865766.1_ (Len=343)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186682570_ref_YP_001865766.1_, Len=343):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLDNWLSKKQMWLLRGVMVVIFLIQVGAYFWSSYREKNICKLSQPHSQYCDLTVVRKLSGVAEAIALSSDAHTLVGGGGK 80  
WD40-rpts            (________________WD 1________________)(__________________WD 2_____________

Query       81 SFTVWHLPSQQPQLTLKGHANDIYDLALSADGQTLVSGSLDKTIKVWNLATGKLKFTLKGHSEVVNALAIAPNQQTIVSA 160 
WD40-rpts      _____)   (_________________WD 3________________)   (_________________WD 4_______

Query      161 SSDKTIKMWNLATGQLTSTLAQTPDAVITLVLSSDGKTLVSGDSSNHITVWDLVTGRKRTTLTGHYGVVSALAISRDGQL 240 
WD40-rpts      _________)   (_________________WD 5________________)   (________________WD 6____

Query      241 LASGSAKQVKVWNLTTGKLLQDFGGFYFPQITIAFSPNGQSLIAGGGYKPYRVWNLATGNMEATLPDVSNWSGAMVFSRD 320 
WD40-rpts      ____________)   (_________________WD 7________________)   (________________WD 8_

Query      321 GKTLFSGTQDGITVWKFSAPSHP 343 
WD40-rpts      _______________)       

8 WD40-repeats found in QUERY=gi_186682570_ref_YP_001865766.1_ (Len=343):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-44       5.61  346.21  0.00134       12.5%     33.11
  WD 2:  Seg  5    45-86       6.97  402.38  0.00023       20.0%     53.26
  WD 3:  Seg  9    90-128     10.37  543.08  3.0e-06       45.0%     57.26
  WD 4:  Seg 13   132-170     10.24  537.67  3.5e-06       37.5%     57.62
  WD 5:  Seg 17   174-212      9.99  527.51  4.8e-06       40.0%     53.66
  WD 6:  Seg 21   216-253      8.54  467.39  3.1e-05       40.0%     53.38
  WD 7:  Seg 25   257-295      9.60  511.41  8.0e-06       27.5%     57.10
  WD 8:  Seg 29   299-336      8.19  453.00  4.9e-05       40.0%     53.65

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-44     SKK---QMWLLRGVMVVI--FLIQVGAYFWSSYREKNICKLSQ
   WD 2   45-86     PHSQYCDLTVVRKLSGVAEAIALSSDAHTLVGGG-GKSFTVWH
   WD 3   90-128    -QQ---PQLTLKGHANDIYDLALSADGQTLVSGSLDKTIKVWN
   WD 4  132-170    -GK---LKFTLKGHSEVVNALAIAPNQQTIVSASSDKTIKMWN
   WD 5  174-212    -GQ---LTSTLAQTPDAVITLVLSSDGKTLVSGDSSNHITVWD
   WD 6  216-253    -GR---KRTTLTGHYGVVSALAISRDGQLLASGSAK-QVKVWN
   WD 7  257-295    -GK---LLQDFGGFYFPQITIAFSPNGQSLIAGGGYKPYRVWN
   WD 8  299-336    -GN---MEATLPDVSNWSGAMVFSRDGKTLFSGTQDG-ITVWK

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD