Input parameters:

  Query = gi_186682669_ref_YP_001865865.1_ (Len=692)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186682669_ref_YP_001865865.1_, Len=692):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVAVDQIEKVFELTGGGKYIALKGIDLQIKKGEFVSLIGHSGCGKSTLLNMIAGLDLPTEGIVTLEGQRITKPGPDRMV 80  
WD40-rpts                                    (________________________WD 1_____________________

Query       81 VFQNYSLLPWRTVRENIALAVDSVMKGLPADERNAIIEKHINMVGLRPHADKQPGMLSGGQKQRVAIARALAIRPKLLLL 160 
WD40-rpts      ___)                                                                            

Query      161 DEPFGALDALTRGNLQEQLMQICEENQVTAVMVTHDVDEAVLLSDRIVMLTNGPESKIGDILEVDIPRPRKRMEVVEHPS 240 
WD40-rpts                                                                                      

Query      241 YYSLRSEMIYFLNQQKRIKKIRARKTADIARHGLEKVNLEIGFLPLTACAPLAVAKEKGFFTKHGLDEVNLVRESNWRGI 320 
WD40-rpts                                                                                      

Query      321 VDGISGGYLDAAQMPSGMPMWLTLGGHNNQPLPVVTALTMTRNGNAITLAKHFYDQGVQTLSDFKRYLLRTREQRHTMGV 400 
WD40-rpts                                                                                      

Query      401 VHPASMHNLLLRYWLAAGGIDPDCDVDMKTIPPAQMVADLKAGSIDGYCVGEPWNYRAAVEGVGFTIATDLEVWLGHPGK 480 
WD40-rpts                                                                                      

Query      481 VLGVREDWAETYPNTHIALTKALLEACQYCANPDNAQEIRQILAGRDYVSTDLEYIQLEDPDSNVCSLDHPLRDYAHHQF 560 
WD40-rpts                                                                                      

Query      561 YSESAINRPSRTEQIWIMSQLARWGDTPFPRNWVEVVERVCRVRVFSTAARELGLDISYIRQPIKLFDGTPFNADDPIAY 640 
WD40-rpts                                                                                      

Query      641 LNSLKIKCDLLSRKLFLMHQEENLRHKKIVTERGSGRSKTSYFLWGGHLARL 692 
WD40-rpts                                                          

1 WD40-repeats found in QUERY=gi_186682669_ref_YP_001865865.1_ (Len=692):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    31-84       3.36  253.65  0.02352       17.5%     11.23

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-84     KKGEFVSLIGHSGCGKSTLLNMIAGLDLPTEGIVTLEGQRITKPGPDRMVVFQN

   WD40 Template    TGECLRTLSGHTSGV--------------TSVSFSPDGKRLVSGSEDGTIKVWD